Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11g10
         (702 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0297 - 17408902-17409045,17409134-17409304,17410563-174106...    31   1.2  
06_03_1104 + 27623632-27623795,27624052-27624175,27624316-276248...    29   2.7  
02_05_0813 - 31951168-31951722                                         29   4.7  
01_01_0832 - 6500139-6500333,6500610-6500875,6501494-6501815,650...    28   8.3  

>02_03_0297 -
           17408902-17409045,17409134-17409304,17410563-17410664,
           17412605-17412718,17413095-17413178,17413669-17413808,
           17414429-17414560,17415430-17415618,17415736-17415801,
           17415905-17415938
          Length = 391

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +3

Query: 186 VLSETGTNCNIASVSETMSDINQTKLDTLEKKAV 287
           ++ ETG NCNI+   E ++    T L +L  KAV
Sbjct: 240 LMEETGANCNISDNGEPVNKRKATDLKSLGNKAV 273


>06_03_1104 +
           27623632-27623795,27624052-27624175,27624316-27624832,
           27624943-27625073,27625161-27625567,27625690-27625963,
           27626195-27626814,27627424-27627859
          Length = 890

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +1

Query: 466 LWIWCYNNWIIWKRCQISVISSTYCFTSLCDL 561
           LWIW  + + +W  C +    + YC  S  D+
Sbjct: 226 LWIWPSSRYHVWSNCNLMGKLAQYCVASEMDV 257


>02_05_0813 - 31951168-31951722
          Length = 184

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
 Frame = -3

Query: 532 SMISLIFGNASKLSNCCSTKSKAGT--SVITLSNSSMSLMPLF----IKAGGKGRRQLS 374
           S+ S++ G   + S+CCS+ S+A +  S    S SS      F    + AGG+G  +LS
Sbjct: 52  SLPSVVRGEEEEASSCCSSSSEASSDASSSAASGSSSPWAARFHREMVAAGGRGGGRLS 110


>01_01_0832 -
           6500139-6500333,6500610-6500875,6501494-6501815,
           6501915-6502156,6502229-6502457,6503020-6503184,
           6503279-6503605,6504150-6504191,6504333-6504400,
           6504748-6504934,6506249-6506311,6506748-6506790,
           6506919-6507019,6507110-6507184,6507359-6507445,
           6507593-6507682,6507906-6507992,6508585-6508783,
           6509113-6509177,6509502-6509606,6509726-6509871,
           6510100-6510224,6510335-6510437,6510482-6510596,
           6510734-6510869,6511298-6511387,6511484-6511578,
           6511698-6511763,6511868-6511936,6512034-6512147,
           6512241-6512448,6512545-6512600,6512818-6513552
          Length = 1671

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
 Frame = +1

Query: 469 WI--WCYNNWIIWKRCQISVISSTYCFTSLCDLKN 567
           W+  W YN  II  RCQI+V    Y    + D  N
Sbjct: 582 WVEDWDYNKIIICNRCQIAVHQECYGARDVQDFTN 616


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,539,469
Number of Sequences: 37544
Number of extensions: 321594
Number of successful extensions: 795
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 795
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)