Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11g09
         (656 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory recept...    28   0.078
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    23   2.2  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    23   2.9  
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    22   5.1  
AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII pr...    22   5.1  
AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A prot...    21   8.9  
AF017414-2|AAB70261.1|  150|Tribolium castaneum abdominal-A prot...    21   8.9  

>AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory receptor
           candidate 60 protein.
          Length = 364

 Score = 27.9 bits (59), Expect = 0.078
 Identities = 33/112 (29%), Positives = 45/112 (40%), Gaps = 5/112 (4%)
 Frame = -1

Query: 422 LLTNLPSEFTSSKLPPIFAFPSCFFLSRSSASC-----FSFLTYIIKAVKPPPTTTVAAI 258
           LL   P      K   +F F   F   R +  C      +FL Y IK  +       A  
Sbjct: 129 LLGQYPVGIVGVKNASLFIFDLIFLSFRCTKLCKEANKTAFLWYHIKIDREDEE---ARD 185

Query: 257 DFHVIGISVFGVLLGGTAHCRTGVVLNARNTKLTRFRSMEFILLF*QFYVTL 102
           DF  +GI +    L  TA CR   + N+    L  F ++ F++L    YVTL
Sbjct: 186 DFIKLGIKLSNDKLEITA-CRLFKIDNSLILDLLVFITINFVVLLGDLYVTL 236



 Score = 21.0 bits (42), Expect = 8.9
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -1

Query: 269 VAAIDFHVIGISVFGVLLG 213
           V  +D HV   ++F  LLG
Sbjct: 113 VVTVDLHVFFFTLFNKLLG 131


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 3/22 (13%)
 Frame = +1

Query: 190 PVRQCAVPPKR---TPKTLMPI 246
           P+R  A+PPKR   +PK   PI
Sbjct: 65  PIRPVALPPKREIPSPKRSSPI 86


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = +1

Query: 487 PDELEKLAEVVDLHDKTPSSPPLQPVFISVDPQRD 591
           P    K    + LHDKTP      PV  ++ P  D
Sbjct: 288 PGLTHKYTHEIKLHDKTPFLKRPYPVPFALRPAVD 322


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 9/38 (23%), Positives = 19/38 (50%)
 Frame = +2

Query: 512 KLWIYMTKLHHHHLCNQSSYQ*TLRGTHQN*LASTVRS 625
           +++ Y++  HHHH    +++     G+     +ST  S
Sbjct: 59  RMYPYVSAAHHHHQAAAAAFGAAASGSMVPSFSSTASS 96


>AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII
           protein.
          Length = 209

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 9/38 (23%), Positives = 19/38 (50%)
 Frame = +2

Query: 512 KLWIYMTKLHHHHLCNQSSYQ*TLRGTHQN*LASTVRS 625
           +++ Y++  HHHH    +++     G+     +ST  S
Sbjct: 59  RMYPYVSAAHHHHQAAAAAFGAAASGSMVPSFSSTASS 96


>AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A
           protein.
          Length = 284

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 9/37 (24%), Positives = 18/37 (48%)
 Frame = +2

Query: 515 LWIYMTKLHHHHLCNQSSYQ*TLRGTHQN*LASTVRS 625
           ++ Y++  HHHH    +++     G+     +ST  S
Sbjct: 1   MYPYVSAAHHHHQAAAAAFGAAASGSMVPSFSSTASS 37


>AF017414-2|AAB70261.1|  150|Tribolium castaneum abdominal-A
           protein.
          Length = 150

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 9/37 (24%), Positives = 18/37 (48%)
 Frame = +2

Query: 515 LWIYMTKLHHHHLCNQSSYQ*TLRGTHQN*LASTVRS 625
           ++ Y++  HHHH    +++     G+     +ST  S
Sbjct: 1   MYPYVSAAHHHHQAAAAAFGAAASGSMVPSFSSTASS 37


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,905
Number of Sequences: 336
Number of extensions: 3416
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16969115
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)