Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte11g09
(656 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_10820| Best HMM Match : Sulfotransfer_1 (HMM E-Value=0) 174 5e-44
SB_43665| Best HMM Match : Thioredoxin (HMM E-Value=0.019) 34 0.12
SB_44245| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.27
SB_16018| Best HMM Match : Antimicrobial18 (HMM E-Value=0.89) 31 0.83
SB_6116| Best HMM Match : Patched (HMM E-Value=0.025) 31 1.1
SB_22073| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_25036| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_26738| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_45713| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_48126| Best HMM Match : RVT_1 (HMM E-Value=5.5e-39) 29 3.3
SB_48315| Best HMM Match : GASA (HMM E-Value=1.8) 29 3.3
SB_28063| Best HMM Match : ABC_tran (HMM E-Value=0) 29 3.3
SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42) 29 4.4
SB_7619| Best HMM Match : ArfGap (HMM E-Value=5.3) 29 4.4
SB_59586| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_56230| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_26706| Best HMM Match : Herpes_US9 (HMM E-Value=3.5) 28 5.8
SB_44501| Best HMM Match : Adap_comp_sub (HMM E-Value=2.39622e-43) 28 5.8
SB_16361| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_14608| Best HMM Match : AhpC-TSA (HMM E-Value=0) 28 5.8
SB_1930| Best HMM Match : zf-CCHC (HMM E-Value=0.53) 28 5.8
SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
>SB_10820| Best HMM Match : Sulfotransfer_1 (HMM E-Value=0)
Length = 922
Score = 174 bits (424), Expect = 5e-44
Identities = 77/141 (54%), Positives = 103/141 (73%), Gaps = 3/141 (2%)
Frame = +1
Query: 241 PITWKSMAATVVVGGGLTAFMMYVKKEKQEALDRERKKQLGKAKIGGSFELVNSEGKLVK 420
PITW S A ++ GG + ++ +K+EK++ ++E+K+ +GK +GG F+L++ GK
Sbjct: 710 PITWTSFAVFLLAGGAIVYYVRTLKEEKEKKKEKEKKRSIGKVALGGPFDLIDHHGKPKT 769
Query: 421 SADFLGKWMLIYFGFTHCPDICPDELEKLAEVVDLHDKTPS---SPPLQPVFISVDPQRD 591
DF GKW+L+YFGFTHCPDICPDELEK+AE +DL DKT S LQP+FISVDP+RD
Sbjct: 770 DKDFRGKWLLLYFGFTHCPDICPDELEKMAEAIDLVDKTTKGKVSEELQPLFISVDPKRD 829
Query: 592 TPELVGKYCKEFTPRLLGLTG 654
T E V +Y KEF P+LLGLTG
Sbjct: 830 TVEAVAEYVKEFHPKLLGLTG 850
>SB_43665| Best HMM Match : Thioredoxin (HMM E-Value=0.019)
Length = 415
Score = 33.9 bits (74), Expect = 0.12
Identities = 26/83 (31%), Positives = 40/83 (48%)
Frame = +1
Query: 346 RKKQLGKAKIGGSFELVNSEGKLVKSADFLGKWMLIYFGFTHCPDICPDELEKLAEVVDL 525
R K L + I GS LVN G+++ + D GK + IYF CP C +L D
Sbjct: 146 RPKPLSEI-ISGS--LVNKNGEVINAGDLKGKIVGIYFSAHWCPP-CRAFTPELVSTYDA 201
Query: 526 HDKTPSSPPLQPVFISVDPQRDT 594
K ++ + +F+S D +D+
Sbjct: 202 VRKANNA--FEVIFVSSDRSQDS 222
>SB_44245| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 404
Score = 32.7 bits (71), Expect = 0.27
Identities = 22/62 (35%), Positives = 32/62 (51%)
Frame = +1
Query: 190 PVRQCAVPPKRTPKTLMPITWKSMAATVVVGGGLTAFMMYVKKEKQEALDRERKKQLGKA 369
PV +C+ PPK + L PIT S A V+ G L +F VK + LD ++ GK+
Sbjct: 148 PVPKCS-PPKTLSEDLRPITLTSQLAKVMEGFALDSFFACVK----DKLDPKQFSVTGKS 202
Query: 370 KI 375
+
Sbjct: 203 TV 204
>SB_16018| Best HMM Match : Antimicrobial18 (HMM E-Value=0.89)
Length = 1494
Score = 31.1 bits (67), Expect = 0.83
Identities = 37/110 (33%), Positives = 50/110 (45%), Gaps = 4/110 (3%)
Frame = -1
Query: 626 NSLQYLPTNSGVSL*GSTDMKTGCKGGDDGVLSCKSTTSANFSNSSGQISGQ*VKPK*IN 447
+SL PT+S + +D T D + S S+ ++F SS +S P
Sbjct: 652 SSLSVFPTSSSLP----SDFLTSSSSPSDFLSS--SSLPSDFLTSSSLLSDFLSLPSDFL 705
Query: 446 IHFPKKSALLTNLPSEF-TSSKLPPIFAFPSCF---FLSRSSASCFSFLT 309
S LT+LPS+F TSS LP F S FL+ SS+S FLT
Sbjct: 706 TSSSSLSDFLTSLPSDFLTSSSLPSDFLTSSSSLSDFLT-SSSSLSDFLT 754
>SB_6116| Best HMM Match : Patched (HMM E-Value=0.025)
Length = 831
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -1
Query: 428 SALLTNLPSEFTSSKLPPIFAFPSCFFLSRSSAS 327
SA+ LP E+T+ +PP FAF S L+R S
Sbjct: 23 SAIAILLPVEYTAKPIPPAFAFCSRIQLARGQKS 56
>SB_22073| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 237
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +1
Query: 349 KKQLGK-AKIGGSFELVNSEGKLVKSADFLGKWMLIYFGFTHCPDICPDELEKLAEVVD 522
K Q+ K A +VN E K +K +DF GK+++ +F +CP E+ ++ ++
Sbjct: 53 KAQISKPAPFWEGTAVVNGEFKELKLSDFEGKYLVFFFYPLDFTFVCPTEIIAFSDRIE 111
>SB_25036| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 192
Score = 29.9 bits (64), Expect = 1.9
Identities = 21/62 (33%), Positives = 31/62 (50%)
Frame = +1
Query: 190 PVRQCAVPPKRTPKTLMPITWKSMAATVVVGGGLTAFMMYVKKEKQEALDRERKKQLGKA 369
PV +C+ PPK + L PIT S A V+ G L + VK + LD ++ GK+
Sbjct: 108 PVPKCS-PPKTLSEDLRPITLTSQLAKVMEGFALDSLFACVK----DKLDPKQFSVSGKS 162
Query: 370 KI 375
+
Sbjct: 163 TV 164
>SB_26738| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 153
Score = 29.5 bits (63), Expect = 2.5
Identities = 17/42 (40%), Positives = 22/42 (52%)
Frame = +1
Query: 190 PVRQCAVPPKRTPKTLMPITWKSMAATVVVGGGLTAFMMYVK 315
PV +C+ PPK + L PIT S A V+ G L + VK
Sbjct: 99 PVPKCS-PPKTLSEDLRPITLTSQLAKVMEGFALDSLFACVK 139
>SB_45713| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 702
Score = 29.5 bits (63), Expect = 2.5
Identities = 24/69 (34%), Positives = 35/69 (50%)
Frame = +1
Query: 307 YVKKEKQEALDRERKKQLGKAKIGGSFELVNSEGKLVKSADFLGKWMLIYFGFTHCPDIC 486
+V+K+ A D E+KK L K+KI G VNS KS + G+ L H ++
Sbjct: 442 FVQKQVP-ADDDEKKKPLRKSKIEGCVAKVNSHISTSKSGETSGE-CLKKVTMGHKTNLD 499
Query: 487 PDELEKLAE 513
+LE +AE
Sbjct: 500 VSKLENMAE 508
>SB_48126| Best HMM Match : RVT_1 (HMM E-Value=5.5e-39)
Length = 1510
Score = 29.1 bits (62), Expect = 3.3
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = +1
Query: 178 LSTTPVRQCAVPPKRTPKTLMPITWKSMAATVVVGGGLTAF--MMYVKKEKQEA 333
+++TPVR+ P+RTPK + + W V+ G T +++ +EK EA
Sbjct: 1238 VASTPVRRY---PRRTPKPVRRVNWSIYEKRVIFTGSSTRSCPSVHMTQEKTEA 1288
>SB_48315| Best HMM Match : GASA (HMM E-Value=1.8)
Length = 340
Score = 29.1 bits (62), Expect = 3.3
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = +1
Query: 178 LSTTPVRQCAVPPKRTPKTLMPITWKSMAATVVVGGGLTAF--MMYVKKEKQEA 333
+++TPVR+ P+RTPK + + W V+ G T +++ +EK EA
Sbjct: 172 VASTPVRRY---PRRTPKPVRRVNWSIYEKRVIFTGSSTRSCPSVHMTQEKTEA 222
>SB_28063| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 1238
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +1
Query: 223 TPKTLMPITWKSMAATVVVGGGLTAFMMYVKKEKQEALDR 342
TPK + P+T +V +G GL MY K+ + ALDR
Sbjct: 310 TPKLIFPLTTIINILSVTIGKGL-PLTMYSIKDAKTALDR 348
>SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)
Length = 1531
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Frame = -1
Query: 398 FTSSKLPPIFAFPSCFFLSRSSAS---CFSFLTYII-KAVKPP 282
+ +++PP+ +PSC ++ AS F+ L Y++ K +PP
Sbjct: 1288 YPRTRVPPVRVYPSCLPCTQEHASPLFVFTLLVYLVPKNTRPP 1330
>SB_7619| Best HMM Match : ArfGap (HMM E-Value=5.3)
Length = 483
Score = 28.7 bits (61), Expect = 4.4
Identities = 21/62 (33%), Positives = 31/62 (50%)
Frame = +1
Query: 190 PVRQCAVPPKRTPKTLMPITWKSMAATVVVGGGLTAFMMYVKKEKQEALDRERKKQLGKA 369
PV +C+ PPK + L PIT S A V+ G L + VK + LD ++ GK+
Sbjct: 228 PVPKCS-PPKTLSEDLRPITLTSQLAKVMEGFALDSQFACVK----DKLDPKQFSVSGKS 282
Query: 370 KI 375
+
Sbjct: 283 TV 284
>SB_59586| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 28.3 bits (60), Expect = 5.8
Identities = 17/42 (40%), Positives = 21/42 (50%)
Frame = +1
Query: 190 PVRQCAVPPKRTPKTLMPITWKSMAATVVVGGGLTAFMMYVK 315
PV +C PPK + L PIT S A V+ G L + VK
Sbjct: 208 PVPKC-YPPKTLSEDLRPITLTSQLAKVMEGIALDSLFACVK 248
>SB_56230| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 996
Score = 28.3 bits (60), Expect = 5.8
Identities = 33/132 (25%), Positives = 60/132 (45%), Gaps = 3/132 (2%)
Frame = +1
Query: 265 ATVVVGGGLTAFMMYVKKEKQEALDRERKKQLGKAKIGGSFEL-VNSEGKLVKSADF-LG 438
+ ++ G + F+M ++ K + + E + + KA++ +FE + EG L++ D L
Sbjct: 90 SNLISEGKIVDFVMVYEETKGKD-EEEIRDEEEKAEMRRNFEEHLIKEGLLLQHTDSDLN 148
Query: 439 KWMLIYFGFTHCP-DICPDELEKLAEVVDLHDKTPSSPPLQPVFISVDPQRDTPELVGKY 615
+ + F H P D+ EK+ L + +P PP F + PEL+ +
Sbjct: 149 EEVNKVFVLIHAPWDVLTRFAEKMLLRFPLREASP--PPAAQGFDKI------PELISNW 200
Query: 616 CKEFTPRLLGLT 651
K F P G+T
Sbjct: 201 SKIFDPPSCGIT 212
>SB_26706| Best HMM Match : Herpes_US9 (HMM E-Value=3.5)
Length = 113
Score = 28.3 bits (60), Expect = 5.8
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = +1
Query: 178 LSTTPVRQCAVPPKRTPKTLMPITWKSMAATVVVGGGLTAFMMYVKKEKQEALDRE 345
++ + V A+ P P P T + A +GG +F + + ++ Q ALD+E
Sbjct: 1 MANSDVSSGAIYPS-LPSVCTPQTHMTPTAPASIGGDAQSFRLQIIRDTQAALDKE 55
>SB_44501| Best HMM Match : Adap_comp_sub (HMM E-Value=2.39622e-43)
Length = 822
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +2
Query: 455 ILASLTAQIFVQMSWKS*PKLWIYMTKLHHHHL 553
+L S T I V++S K+ P+ W+ L+H+H+
Sbjct: 770 VLLSDTTVIAVKVSNKNIPEKWVCYRALYHYHI 802
>SB_16361| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 201
Score = 28.3 bits (60), Expect = 5.8
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = +3
Query: 189 SRATMCCSS*KNSEN-AYADNMEVNGS-NRCSWRRLDGFYDVCQKRKTGGA*PRK 347
+R+ + C + E+ A D + VNGS +RC R+DG Y C + G+ R+
Sbjct: 136 NRSFLRCDLLRVDESYARCDLLCVNGSYSRCDLLRVDGSYSRCDLLRVNGSYSRR 190
>SB_14608| Best HMM Match : AhpC-TSA (HMM E-Value=0)
Length = 265
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = +1
Query: 394 VNSEGKLV--KSADFLGKWMLIYFGFTHCPDICPDELEKLAEVVD 522
VN G+ + K +D+ GK+++++F +CP E+ ++ VD
Sbjct: 65 VNKHGEFIDLKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRVD 109
>SB_1930| Best HMM Match : zf-CCHC (HMM E-Value=0.53)
Length = 152
Score = 28.3 bits (60), Expect = 5.8
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +1
Query: 118 C*NNKMNSMLRNRVSFVFRALSTTPVRQCAVPPKRTPKTLMPIT 249
C +N S LRN+ FV +A+ + QC V + P + P+T
Sbjct: 102 CFSNNNLSSLRNK-DFVSKAIYELLINQCIVEHDKAPYCVNPLT 144
>SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6863
Score = 27.9 bits (59), Expect = 7.7
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = +1
Query: 247 TWKSMAATVVVGGGLTAFMMYVKKEKQEALDRERKKQLGKAKIGGSFELVNSEGK 411
+W A ++ G L+A Y+K Q +D E + GKA + E V E K
Sbjct: 802 SWMHEAERLIKNGKLSACKEYLKNVDQIQVDVEMLQDCGKAILENCIERVKFEIK 856
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,918,041
Number of Sequences: 59808
Number of extensions: 405240
Number of successful extensions: 1101
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1004
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1100
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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