Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte11g09
(656 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g08950.1 68416.m01045 electron transport SCO1/SenC family pro... 133 1e-31
At4g39740.1 68417.m05626 electron transport SCO1/SenC family pro... 100 7e-22
At3g57000.1 68416.m06345 nucleolar essential protein-related con... 29 2.1
At4g28590.1 68417.m04089 expressed protein 29 3.6
At4g01860.2 68417.m00244 transducin family protein / WD-40 repea... 29 3.6
At4g01860.1 68417.m00243 transducin family protein / WD-40 repea... 29 3.6
At2g28290.2 68415.m03434 chromatin remodeling protein, putative ... 29 3.6
At2g28290.1 68415.m03433 chromatin remodeling protein, putative ... 29 3.6
At5g01920.1 68418.m00111 protein kinase family protein contains ... 28 4.8
At4g12545.1 68417.m01980 protease inhibitor/seed storage/lipid t... 28 4.8
At3g01780.1 68416.m00118 expressed protein est hit, 28 4.8
At1g60420.1 68414.m06802 DC1 domain-containing protein contains ... 28 4.8
At5g45775.2 68418.m05629 60S ribosomal protein L11 (RPL11D) 28 6.3
At5g45775.1 68418.m05628 60S ribosomal protein L11 (RPL11D) 28 6.3
At4g18730.1 68417.m02768 60S ribosomal protein L11 (RPL11C) 28 6.3
At4g12350.1 68417.m01953 transcription factor, putative (MYB42) ... 28 6.3
At3g58700.1 68416.m06542 60S ribosomal protein L11 (RPL11B) ribo... 28 6.3
At3g26744.1 68416.m03344 basix helix-loop-helix (bHLH) family pr... 28 6.3
At3g21480.1 68416.m02710 transcription activation domain-interac... 28 6.3
At1g55610.1 68414.m06365 protein kinase family protein contains ... 28 6.3
At5g07810.1 68418.m00895 SNF2 domain-containing protein / helica... 27 8.3
At1g77400.1 68414.m09013 expressed protein 27 8.3
>At3g08950.1 68416.m01045 electron transport SCO1/SenC family
protein similar to SP|P23833 SCO1 protein, mitochondrial
precursor {Saccharomyces cerevisiae}; contains Pfam
profile PF02630: SCO1/SenC
Length = 334
Score = 133 bits (321), Expect = 1e-31
Identities = 66/143 (46%), Positives = 86/143 (60%), Gaps = 5/143 (3%)
Frame = +1
Query: 241 PITWKSMAATVVVGGGLTAFMMYVKKEKQEALDR-----ERKKQLGKAKIGGSFELVNSE 405
P++W S G GL + KK E +++ + GKA IGG F L+ +
Sbjct: 124 PVSWMSFFLLFATGAGLVYYYDTQKKRHIEDINKNSIAVKEGPSAGKAAIGGPFSLIRDD 183
Query: 406 GKLVKSADFLGKWMLIYFGFTHCPDICPDELEKLAEVVDLHDKTPSSPPLQPVFISVDPQ 585
GK V + +GKW ++YFGFTHCPDICPDEL KLA +D K S + PVFISVDP+
Sbjct: 184 GKRVTEKNLMGKWTILYFGFTHCPDICPDELIKLAAAID-KIKENSGVDVVPVFISVDPE 242
Query: 586 RDTPELVGKYCKEFTPRLLGLTG 654
RDT + V +Y KEF P+L+GLTG
Sbjct: 243 RDTVQQVHEYVKEFHPKLIGLTG 265
>At4g39740.1 68417.m05626 electron transport SCO1/SenC family
protein similar to SP|P23833 SCO1 protein, mitochondrial
precursor {Saccharomyces cerevisiae}; contains Pfam
profile PF02630: SCO1/SenC
Length = 276
Score = 100 bits (240), Expect = 7e-22
Identities = 44/94 (46%), Positives = 67/94 (71%)
Frame = +1
Query: 373 IGGSFELVNSEGKLVKSADFLGKWMLIYFGFTHCPDICPDELEKLAEVVDLHDKTPSSPP 552
IGG F LV++E K+V DF GKW+L+YFG++ PD+ P++L+ +++ VD + + +
Sbjct: 115 IGGPFTLVSTENKIVTENDFCGKWVLLYFGYSFSPDVGPEQLKMMSKAVDKLE-SKHNEK 173
Query: 553 LQPVFISVDPQRDTPELVGKYCKEFTPRLLGLTG 654
+ PVF+++DPQRDTP + Y KEF R+LGLTG
Sbjct: 174 ILPVFVTLDPQRDTPSHLHAYLKEFDSRILGLTG 207
>At3g57000.1 68416.m06345 nucleolar essential protein-related
contains weak similarity to Nucleolar essential protein
1 (Essential for mitotic growth 1) (Swiss-Prot:Q06287)
[Saccharomyces cerevisiae]
Length = 298
Score = 29.5 bits (63), Expect = 2.1
Identities = 16/54 (29%), Positives = 29/54 (53%)
Frame = +1
Query: 244 ITWKSMAATVVVGGGLTAFMMYVKKEKQEALDRERKKQLGKAKIGGSFELVNSE 405
+T ++ AA + GG+ + KEK + K L AK+G +++L+NS+
Sbjct: 62 VTVEATAAAEDIVGGIPIVLNAPNKEKSGIVFVLEKASLEVAKVGKTYQLLNSD 115
>At4g28590.1 68417.m04089 expressed protein
Length = 331
Score = 28.7 bits (61), Expect = 3.6
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -1
Query: 437 PKKSALLTNLPSEFTSSKLPPIFAFP 360
P+ S LLT L S F+ P+F FP
Sbjct: 11 PRSSMLLTGLNSSFSDMHRSPLFVFP 36
>At4g01860.2 68417.m00244 transducin family protein / WD-40 repeat
family protein contains ten G-protein beta-subunit
(beta-transducin) WD-40 repeats
Length = 1308
Score = 28.7 bits (61), Expect = 3.6
Identities = 20/52 (38%), Positives = 24/52 (46%)
Frame = -1
Query: 632 GVNSLQYLPTNSGVSL*GSTDMKTGCKGGDDGVLSCKSTTSANFSNSSGQIS 477
GVN L +NS S G+ M GGDD L C S + SN+ IS
Sbjct: 1157 GVNCLHVSRSNSSPSY-GNGLMFNVISGGDDQALHCLSFNILSSSNNRATIS 1207
>At4g01860.1 68417.m00243 transducin family protein / WD-40 repeat
family protein contains ten G-protein beta-subunit
(beta-transducin) WD-40 repeats
Length = 1308
Score = 28.7 bits (61), Expect = 3.6
Identities = 20/52 (38%), Positives = 24/52 (46%)
Frame = -1
Query: 632 GVNSLQYLPTNSGVSL*GSTDMKTGCKGGDDGVLSCKSTTSANFSNSSGQIS 477
GVN L +NS S G+ M GGDD L C S + SN+ IS
Sbjct: 1157 GVNCLHVSRSNSSPSY-GNGLMFNVISGGDDQALHCLSFNILSSSNNRATIS 1207
>At2g28290.2 68415.m03434 chromatin remodeling protein, putative (SYD)
similar to transcriptional activator HBRM [Homo sapiens]
GI:414117; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain; identical to cDNA putative chromatin
remodeling protein SYD (SPLAYED) GI:13603720
Length = 3529
Score = 28.7 bits (61), Expect = 3.6
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +1
Query: 184 TTPVRQCAVPPKRTPKTLMPITWKSMAATVVVGGGLTA 297
T P+++ PKRT K L P++ +++ T G +++
Sbjct: 1444 TQPIKRGRGRPKRTDKALTPVSLSAVSRTQATGNAISS 1481
>At2g28290.1 68415.m03433 chromatin remodeling protein, putative (SYD)
similar to transcriptional activator HBRM [Homo sapiens]
GI:414117; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain; identical to cDNA putative chromatin
remodeling protein SYD (SPLAYED) GI:13603720
Length = 3574
Score = 28.7 bits (61), Expect = 3.6
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +1
Query: 184 TTPVRQCAVPPKRTPKTLMPITWKSMAATVVVGGGLTA 297
T P+++ PKRT K L P++ +++ T G +++
Sbjct: 1444 TQPIKRGRGRPKRTDKALTPVSLSAVSRTQATGNAISS 1481
>At5g01920.1 68418.m00111 protein kinase family protein contains
eukaryotic protein kinase domain, INTERPRO:IPR000719
Length = 495
Score = 28.3 bits (60), Expect = 4.8
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Frame = +1
Query: 475 PDICPDELEKLAEVVDLHDKTPSSPPLQPVFISVDP---QRDTPELVGKY 615
PD CP EL L E +TPS PP +P+ + P Q ++P+L Y
Sbjct: 348 PDYCPPELYVLPE------ETPSPPP-EPIAALLSPILWQLNSPDLFDMY 390
>At4g12545.1 68417.m01980 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein contains protease
inhibitor/seed storage/LTP family domain, Pfam:PF00234
Length = 108
Score = 28.3 bits (60), Expect = 4.8
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Frame = +1
Query: 448 LIYFGFTHCPD-ICPDELEKLAEVVDLHDKTPSSPPLQPVFISVDPQRDTPELVGKYCKE 624
L++F T CP ++ A V++L D T +PP++P + D E C
Sbjct: 15 LLFFTCTSATTGTCPIQISTCANVLNLVDLTLGNPPVKPCCSLIQGLADL-EAAACLCTA 73
Query: 625 FTPRLLGL 648
+LG+
Sbjct: 74 LKASILGI 81
>At3g01780.1 68416.m00118 expressed protein est hit,
Length = 1176
Score = 28.3 bits (60), Expect = 4.8
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = +1
Query: 313 KKEKQEALDRERKKQLGKAKIGGSFELVNSE--GKLVKSADFLGKWMLI 453
KKEK+E D+E KK+ K K G+F + +E + A L +W ++
Sbjct: 1120 KKEKEEGKDKEEKKKKEKEK--GTFSKLTAEETEHMALQAAVLQEWHIL 1166
>At1g60420.1 68414.m06802 DC1 domain-containing protein contains
Pfam domain PF03107: DC1 domain
Length = 578
Score = 28.3 bits (60), Expect = 4.8
Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 5/95 (5%)
Frame = +1
Query: 247 TWKSMAATVVVGGGLTAFMMYVKKEKQEALDRERKK----QLGKAKIGGSFELV-NSEGK 411
T S A + G+ A+ + ++ QE + E+ K L + G V +G
Sbjct: 296 TRHSNVAEAIDDYGVLAYP-FTPEKFQELKELEKAKVEAQTLESLLVSGDLNYVLGKDGA 354
Query: 412 LVKSADFLGKWMLIYFGFTHCPDICPDELEKLAEV 516
V +D +GK +L+YF CP C KL EV
Sbjct: 355 KVLVSDLVGKTILMYFSAHWCPP-CRAFTPKLVEV 388
Score = 27.9 bits (59), Expect = 6.3
Identities = 20/68 (29%), Positives = 33/68 (48%)
Frame = +1
Query: 391 LVNSEGKLVKSADFLGKWMLIYFGFTHCPDICPDELEKLAEVVDLHDKTPSSPPLQPVFI 570
LV ++G+ VK LGK + +YF C C +L EV +++ S + VF+
Sbjct: 28 LVRNDGEQVKVDSLLGKKIGLYFSAAWCGP-CQRFTPQLVEV---YNELSSKVGFEIVFV 83
Query: 571 SVDPQRDT 594
S D ++
Sbjct: 84 SGDEDEES 91
>At5g45775.2 68418.m05629 60S ribosomal protein L11 (RPL11D)
Length = 182
Score = 27.9 bits (59), Expect = 6.3
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Frame = -1
Query: 338 SSASCFSF--LTYIIKAVKPPPTTTVAAIDFHVIGISVFGVLLGGTAHCRTGVVLNARNT 165
S CF F +I +K P+T + +DF+V+ + G + C+T V + R T
Sbjct: 99 SDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVV-LERPGYRVARRRRCKTRVGIQHRVT 157
Query: 164 K 162
K
Sbjct: 158 K 158
>At5g45775.1 68418.m05628 60S ribosomal protein L11 (RPL11D)
Length = 172
Score = 27.9 bits (59), Expect = 6.3
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Frame = -1
Query: 338 SSASCFSF--LTYIIKAVKPPPTTTVAAIDFHVIGISVFGVLLGGTAHCRTGVVLNARNT 165
S CF F +I +K P+T + +DF+V+ + G + C+T V + R T
Sbjct: 89 SDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVV-LERPGYRVARRRRCKTRVGIQHRVT 147
Query: 164 K 162
K
Sbjct: 148 K 148
>At4g18730.1 68417.m02768 60S ribosomal protein L11 (RPL11C)
Length = 182
Score = 27.9 bits (59), Expect = 6.3
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Frame = -1
Query: 338 SSASCFSF--LTYIIKAVKPPPTTTVAAIDFHVIGISVFGVLLGGTAHCRTGVVLNARNT 165
S CF F +I +K P+T + +DF+V+ + G + C+T V + R T
Sbjct: 99 SDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVV-LERPGYRVARRRRCKTRVGIQHRVT 157
Query: 164 K 162
K
Sbjct: 158 K 158
>At4g12350.1 68417.m01953 transcription factor, putative (MYB42)
identical to cDNA putative transcription factor (MYB42)
GI:5823330
Length = 168
Score = 27.9 bits (59), Expect = 6.3
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = -3
Query: 522 IHNFG*LFQLIWTN 481
IHN+G LF ++WTN
Sbjct: 71 IHNYGDLFNILWTN 84
>At3g58700.1 68416.m06542 60S ribosomal protein L11 (RPL11B)
ribosomal protein L11, cytosolic, Arabidopsis thaliana,
PIR:S49033
Length = 182
Score = 27.9 bits (59), Expect = 6.3
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Frame = -1
Query: 338 SSASCFSF--LTYIIKAVKPPPTTTVAAIDFHVIGISVFGVLLGGTAHCRTGVVLNARNT 165
S CF F +I +K P+T + +DF+V+ + G + C+T V + R T
Sbjct: 99 SDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVV-LERPGYRVARRRRCKTRVGIQHRVT 157
Query: 164 K 162
K
Sbjct: 158 K 158
>At3g26744.1 68416.m03344 basix helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 494
Score = 27.9 bits (59), Expect = 6.3
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +1
Query: 499 EKLAEVVDLHDKTPSSPP--LQPVFISVDPQRDTPELVGKYCKE 624
E L + DLH++ S+PP L P S P TP+ + KE
Sbjct: 351 ELLQRINDLHNELESTPPGSLPPTSSSFHPLTPTPQTLSCRVKE 394
>At3g21480.1 68416.m02710 transcription activation
domain-interacting protein-related contains weak
similarity to Pax transcription activation domain
interacting protein PTIP (GI:4336734) [Mus musculus]
Length = 1045
Score = 27.9 bits (59), Expect = 6.3
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +3
Query: 243 DNMEVNGSNRCSWRRLDGFYDVCQKRKTGGA*PRKKK 353
DN E G RR D F+ V KR+ + PR++K
Sbjct: 362 DNREDEGGGDIYRRRKDEFFGVASKRREFSSLPREQK 398
>At1g55610.1 68414.m06365 protein kinase family protein contains
Prosite:PS00107: Protein kinases ATP-binding region
signature
Length = 1166
Score = 27.9 bits (59), Expect = 6.3
Identities = 23/65 (35%), Positives = 29/65 (44%)
Frame = +1
Query: 178 LSTTPVRQCAVPPKRTPKTLMPITWKSMAATVVVGGGLTAFMMYVKKEKQEALDRERKKQ 357
L P+R C P+R P T K AT V+ G +FM +V AL R RK Q
Sbjct: 747 LCGVPLRPCGSAPRR-PITSRIHAKKQTVATAVIAGIAFSFMCFVMLVM--ALYRVRKVQ 803
Query: 358 LGKAK 372
+ K
Sbjct: 804 KKEQK 808
>At5g07810.1 68418.m00895 SNF2 domain-containing protein / helicase
domain-containing protein / HNH endonuclease
domain-containing protein similar to HepA-related protein
HARP [Homo sapiens] GI:6693791; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain, PF01844: HNH endonuclease
Length = 1190
Score = 27.5 bits (58), Expect = 8.3
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -3
Query: 255 LPCYRHKRFRSSFRRNSTLSHGSCT*C 175
L CY R R+S R + HG CT C
Sbjct: 1008 LACYEDYRTRTSSRYIRQIEHGICTNC 1034
>At1g77400.1 68414.m09013 expressed protein
Length = 232
Score = 27.5 bits (58), Expect = 8.3
Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
Frame = -1
Query: 437 PKKSALLTNLPSEFTSSKLPPIFAFPSCFFLSRSSASCFSFLTYIIKAVKP----PPTTT 270
PKK + L P + LPP + PS F+S S + S LT + P PP T
Sbjct: 43 PKKLSPLRFKPLSHSQPLLPPALSPPSSSFISNSKSRPLSPLTPHSFSTTPSKLKPPRTP 102
Query: 269 VAAIDFHVIGIS 234
+ F+ G S
Sbjct: 103 SSLSGFYSPGPS 114
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,110,923
Number of Sequences: 28952
Number of extensions: 299957
Number of successful extensions: 930
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 927
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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