Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11g07
         (706 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0437 - 19084990-19087695                                         29   2.7  
10_08_0366 - 17232010-17232061,17232546-17232601,17232692-172327...    29   4.8  
12_01_0526 - 4171313-4171417,4171514-4171597,4171688-4171758,417...    28   6.3  
07_01_1120 - 10338265-10338624,10338739-10338873,10339411-10340451     28   6.3  

>12_02_0437 - 19084990-19087695
          Length = 901

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = -3

Query: 467 LHTKINLKNSIIYVKNLSYLSPLREISI 384
           LHT   +K S   V+NLSYL+ LR +SI
Sbjct: 677 LHTLKEIKASKNLVQNLSYLTQLRSLSI 704


>10_08_0366 -
           17232010-17232061,17232546-17232601,17232692-17232727,
           17232861-17232941,17233060-17233131,17233394-17233465,
           17233555-17233659,17233754-17233804,17234075-17234109,
           17234692-17234736,17234940-17234973
          Length = 212

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = +2

Query: 224 LEEINPDLAEAFNALPAGRSAGKDVEA--APEIPEHYSSKLNVPENP 358
           L+EI  D+A   ++ P GR  GK V+A  + E+ E    +L   +NP
Sbjct: 167 LDEIGVDIASQLSSAPKGRITGKKVQADESSELDE-LEKRLAALKNP 212


>12_01_0526 -
           4171313-4171417,4171514-4171597,4171688-4171758,
           4171814-4171891,4174482-4174569,4174659-4174850,
           4174939-4175802
          Length = 493

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 227 EEINPDLAEAFNALPAGRSAGKDVEAAPEIPE 322
           +++N DL     + P GR   KDVEAA   P+
Sbjct: 200 KDLNVDLNSITGSGPGGRIVAKDVEAAAAAPK 231


>07_01_1120 - 10338265-10338624,10338739-10338873,10339411-10340451
          Length = 511

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +2

Query: 275 GRSAGKDVEAAP-EIPEHYSSKLNVPENPEIGDSR 376
           GR A K  EAAP   P    S+ +VP  P  GD R
Sbjct: 18  GREARKSKEAAPPREPRRARSRSHVPPPPGAGDGR 52


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,729,019
Number of Sequences: 37544
Number of extensions: 297379
Number of successful extensions: 670
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)