Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11g05
         (337 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    22   2.0  
AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    21   4.6  
DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9 prot...    20   8.0  

>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 2.0
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -1

Query: 325 ILLCNLTNLKQVHFTLISFCLKLFSC 248
           +L  +L  L++VH    +FC +  SC
Sbjct: 153 VLRFHLLELEKVHELCDNFCHRYISC 178


>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 20.6 bits (41), Expect = 4.6
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -1

Query: 313 NLTNLKQVHFTLISFCLKLFSC 248
           +L  L++VH    +FC +  SC
Sbjct: 1   HLLELEKVHELCDNFCHRYISC 22


>DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9
           protein.
          Length = 383

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = -1

Query: 187 SSFIGCYSGSSCGP 146
           S + G Y GS  GP
Sbjct: 277 SLYAGTYGGSDAGP 290


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,931
Number of Sequences: 336
Number of extensions: 908
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 49
effective length of database: 106,121
effective search space used:  6579502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)