Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11g05
         (337 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1795.03 |gms1||UDP-galactose transporter Gms1|Schizosaccharo...    28   0.33 
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    24   5.4  
SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces pombe...    24   7.1  
SPBC428.08c |clr4||histone H3 methyltransferase Clr4|Schizosacch...    24   7.1  
SPBC31F10.05 |mug37||sequence orphan|Schizosaccharomyces pombe|c...    24   7.1  
SPBP22H7.09c |mis15||kinetochore protein Mis15 |Schizosaccharomy...    23   9.4  

>SPCC1795.03 |gms1||UDP-galactose transporter
           Gms1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 353

 Score = 28.3 bits (60), Expect = 0.33
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = +2

Query: 23  KMKLLIFFGVLAFVAIELIHSKPVAEETKKDETTPPVTVTEGAAR 157
           K+ L    GV+  +A   +++KP ++ +    T  P+T  + AA+
Sbjct: 303 KISLTFLIGVMLVIAATFLYTKPESKPSPSRGTYIPMTTQDAAAK 347


>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
           transporter Bfr1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1530

 Score = 24.2 bits (50), Expect = 5.4
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 71  ELIHSKPVAEETKKDETTPPVTVT 142
           EL     VAE++K+ + T P TVT
Sbjct: 495 ELYRQSAVAEKSKRVKDTSPYTVT 518


>SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 652

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = +1

Query: 196 YERVSNGCHGE 228
           Y+RVSN CHG+
Sbjct: 635 YQRVSNMCHGK 645


>SPBC428.08c |clr4||histone H3 methyltransferase
           Clr4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 490

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 75  SSIATKARTPKKINSFIFKYFRDR 4
           SSI TK R P K++S+    F ++
Sbjct: 182 SSILTKPRNPSKLDSYTHLSFYEK 205


>SPBC31F10.05 |mug37||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 217

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 60  KARTPKKINSFIFKYFRDRF 1
           K R+ KK+ + I  YF D F
Sbjct: 131 KVRSAKKVGNVILYYFEDAF 150


>SPBP22H7.09c |mis15||kinetochore protein Mis15 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 409

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -1

Query: 322 LLCNLTNLKQVHFTLISFCLKLF 254
           LLC  T+L   +FT +S+  ++F
Sbjct: 191 LLCTRTHLPSKYFTSVSWMTQMF 213


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,036,333
Number of Sequences: 5004
Number of extensions: 14074
Number of successful extensions: 27
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)