Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11g05
         (337 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42661| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.94 
SB_22868| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.9  
SB_8263| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-19)                  27   3.8  
SB_56142| Best HMM Match : zf-B_box (HMM E-Value=2.9e-10)              27   5.0  
SB_55627| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   6.6  
SB_51847| Best HMM Match : Peptidase_S28 (HMM E-Value=2.7e-33)         26   8.7  
SB_9539| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   8.7  

>SB_42661| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1717

 Score = 29.1 bits (62), Expect = 0.94
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -1

Query: 172  CYSGSSCGPLCNCHGWC 122
            CYSGS C   C+ HG C
Sbjct: 1643 CYSGSGCNEECSGHGKC 1659



 Score = 27.1 bits (57), Expect = 3.8
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -1

Query: 172  CYSGSSCGPLCNCHGWC 122
            CY+GS C   C+ HG C
Sbjct: 1514 CYTGSGCQSECSGHGEC 1530


>SB_22868| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 394

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 178 IGCYSGSSCGPLCNCHGWCCFILLSFFG 95
           I C +G +C  LC+  G+ C  +  FFG
Sbjct: 124 ITCANGGTCLELCDTGGYECSCVPGFFG 151


>SB_8263| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-19)
          Length = 327

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = +2

Query: 2   NLSRKYLKMKLLIFFGVLAFVAIELIHSKPVAEETKKDETT 124
           +++ +   +  L+F  VL  +AI  +++K + +  KKDE T
Sbjct: 150 HINNEVYSVVFLLFTFVLPVIAISFMYTKTIHKIWKKDEAT 190


>SB_56142| Best HMM Match : zf-B_box (HMM E-Value=2.9e-10)
          Length = 691

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +2

Query: 68  IELIHSKPVAEETKKDETTPPVT 136
           IEL+HS  V+E+ K +E T  VT
Sbjct: 219 IELLHSAIVSEQQKLEEATTSVT 241


>SB_55627| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 162

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +2

Query: 47  GVLAFVAIELIHSKPVAEETKKDETTPPVTVTEGAARAA 163
           GVL+ V+  L+H     ++ KK +T P   +    +RA+
Sbjct: 100 GVLSSVSCSLLHKVTTTKKAKKKKTIPAHVIMTLVSRAS 138


>SB_51847| Best HMM Match : Peptidase_S28 (HMM E-Value=2.7e-33)
          Length = 1224

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 9/19 (47%), Positives = 16/19 (84%)
 Frame = +2

Query: 20 LKMKLLIFFGVLAFVAIEL 76
          +K+ LL+F G+++FVA E+
Sbjct: 3  IKIGLLVFVGIISFVAAEI 21


>SB_9539| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1642

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +2

Query: 2    NLSRKYLKMKLLIFFGVLAFVAIELIHSKP 91
            +LSR    ++ ++   +LAF+ I L HS+P
Sbjct: 1500 DLSRVLFAIRHIVLLPILAFIHILLPHSRP 1529


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,449,809
Number of Sequences: 59808
Number of extensions: 104724
Number of successful extensions: 290
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 272
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 290
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 473307974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)