Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11g05
         (337 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    20   7.0  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    20   9.2  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    20   9.2  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease
          precursor protein.
          Length = 405

 Score = 20.2 bits (40), Expect = 7.0
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 14 KYLKMKLLIFFGVLAF 61
          K +K+ LLIF+G + F
Sbjct: 17 KKVKIVLLIFYGSIMF 32


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
          channel protein.
          Length = 445

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +1

Query: 4  SVSKVLKNETVDFF 45
          SVS+VL + T+DF+
Sbjct: 49 SVSEVLMDFTLDFY 62


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = +1

Query: 148  GRKSCRSSIR*SYFSEYERVSNGCHGE 228
            G K+C       + + Y  +SN C G+
Sbjct: 1611 GPKNCLFRKPEHFVASYALISNQCEGD 1637


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,590
Number of Sequences: 438
Number of extensions: 848
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7591023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)