Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11g05
         (337 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g02180.1 68414.m00147 ferredoxin-related similar to Ferredoxi...    28   1.8  
At1g22530.1 68414.m02814 SEC14 cytosolic factor family protein /...    26   5.4  
At5g23850.1 68418.m02800 expressed protein                             26   7.2  
At3g46930.1 68416.m05093 protein kinase family protein contains ...    26   7.2  

>At1g02180.1 68414.m00147 ferredoxin-related similar to Ferredoxin.
           (SP:O78510) [Cryptomonas phi] {Guillardia theta}
          Length = 226

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -1

Query: 175 GCYSGSSCGPLCNCHGWCCFILLSFFG 95
           GCYSGS+     N H  C  +L SF G
Sbjct: 185 GCYSGSAFPCSSNAHMICMRLLNSFLG 211


>At1g22530.1 68414.m02814 SEC14 cytosolic factor family protein /
           phosphoglyceride transfer family protein contains Pfam
           PF00650 : CRAL/TRIO domain; contains Pfam PF03765 :
           CRAL/TRIO, N-terminus; similar to SEC14-like protein 2
           (Alpha-tocopherol associated protein) (TAP) (bTAP)
           (Fragment) (SP:P58875)  {Bos taurus}
          Length = 683

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +2

Query: 62  VAIELIHSKPVAEETKKDETTPPVTV-TEGAARAA 163
           V +E   + PV  ETK++E   PVT  T+   +AA
Sbjct: 231 VPVETTPAAPVTTETKEEEKAAPVTTETKEEEKAA 265


>At5g23850.1 68418.m02800 expressed protein
          Length = 542

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +2

Query: 8   SRKYLKMKLLIFFGVLAFVAIELIHSKPVAEETKKDETTPPVTVTE 145
           +R Y  + LLI   V AF++  L+    V  E K   TT   T T+
Sbjct: 36  NRSYALVSLLILLIVGAFISTRLLLDTTVLLEKKAATTTTTKTQTQ 81


>At3g46930.1 68416.m05093 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 475

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +2

Query: 5   LSRKYLKMKLLIFFGVLAFVAIELIHSKPVAEETKKDE 118
           L +K L ++ LI FG+     +E IHS+ +  +  K E
Sbjct: 253 LEQKSLPLEQLIDFGLDIAKGMEYIHSREIVHQDLKPE 290


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,385,020
Number of Sequences: 28952
Number of extensions: 77166
Number of successful extensions: 253
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 253
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 389454624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)