Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11g03
         (612 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6738| Best HMM Match : DUF1328 (HMM E-Value=2.4)                    28   6.9  
SB_30297| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_19016| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_20463| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  

>SB_6738| Best HMM Match : DUF1328 (HMM E-Value=2.4)
          Length = 391

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -1

Query: 546 QWINLYSENVTLSLYF*SWLRFERFIRLRIP 454
           QWI+L   N+ + +YF  WL F+ F  + IP
Sbjct: 130 QWISL---NIQIVVYFAVWLTFQLFDAILIP 157


>SB_30297| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 385

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +1

Query: 244 PGLPVPAKMGWLWNAAD 294
           P LP P K GW WN  D
Sbjct: 273 PVLPSPEKYGWKWNDGD 289


>SB_19016| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 273

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -1

Query: 96  KLPIGPWSGPTQQF*LLYTLKFYFVTRYIV 7
           K  I  W  PT  + L+YT+ F F+ +YI+
Sbjct: 115 KFCIEDWPAPTATYRLIYTV-FIFIAQYII 143


>SB_20463| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 309

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +1

Query: 472 EPLEPKPALKVQRKGDVFTIQVNPLKDLTEIAPNEDPYVDCDP 600
           EPL  K  L  + +   +T+QV+ L  L ++A   +P   C P
Sbjct: 44  EPLSEKCHLTPESEEHAYTLQVSQLSVLKKLATQLNPSKACGP 86


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,289,096
Number of Sequences: 59808
Number of extensions: 293081
Number of successful extensions: 640
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)