Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11g03
         (612 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z22178-3|CAA80159.3| 1027|Caenorhabditis elegans Hypothetical pr...    29   2.0  
AF192400-1|AAF24233.1| 1027|Caenorhabditis elegans emb-30 protei...    29   2.0  
U80847-1|AAB37983.2|  738|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z68106-9|CAE17838.1|  551|Caenorhabditis elegans Hypothetical pr...    28   6.0  
Z49207-10|CAE17907.1|  551|Caenorhabditis elegans Hypothetical p...    28   6.0  

>Z22178-3|CAA80159.3| 1027|Caenorhabditis elegans Hypothetical
           protein F54C8.3 protein.
          Length = 1027

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +1

Query: 457 DSEPDEPLEPKPALKVQRKGDVFTIQVNPLKDLTEIAPNEDPYVDC 594
           D EP+   EP+PA  + R G  F  +++  +   E+ P  D   DC
Sbjct: 640 DEEPEPEGEPQPACDLDRVGSFFEKELS--QKALEVLPKCDETFDC 683


>AF192400-1|AAF24233.1| 1027|Caenorhabditis elegans emb-30 protein
           protein.
          Length = 1027

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +1

Query: 457 DSEPDEPLEPKPALKVQRKGDVFTIQVNPLKDLTEIAPNEDPYVDC 594
           D EP+   EP+PA  + R G  F  +++  +   E+ P  D   DC
Sbjct: 640 DEEPEPEGEPQPACDLDRVGSFFEKELS--QKALEVLPKCDETFDC 683


>U80847-1|AAB37983.2|  738|Caenorhabditis elegans Hypothetical
           protein C17H11.2 protein.
          Length = 738

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 220 HKPCMFLRPGLPVPAKMGWL 279
           +K C  LRPG+PVP  M  L
Sbjct: 155 YKKCQMLRPGVPVPRPMSLL 174


>Z68106-9|CAE17838.1|  551|Caenorhabditis elegans Hypothetical
           protein F41E7.9 protein.
          Length = 551

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +1

Query: 460 SEPDEPLEPKPALKVQRKGDVFTIQVNPLKDLTEIAPNE 576
           S P  P +P P ++ Q K DV+  Q NP +  +   P +
Sbjct: 218 SMPQSPSQPNPLVRSQSKSDVYQTQ-NPYRQDSYSQPTQ 255


>Z49207-10|CAE17907.1|  551|Caenorhabditis elegans Hypothetical
           protein F41E7.9 protein.
          Length = 551

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +1

Query: 460 SEPDEPLEPKPALKVQRKGDVFTIQVNPLKDLTEIAPNE 576
           S P  P +P P ++ Q K DV+  Q NP +  +   P +
Sbjct: 218 SMPQSPSQPNPLVRSQSKSDVYQTQ-NPYRQDSYSQPTQ 255


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,522,495
Number of Sequences: 27780
Number of extensions: 215889
Number of successful extensions: 530
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 530
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)