Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11g01
         (740 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33392| Best HMM Match : zf-CCHC (HMM E-Value=0.043)                 30   1.7  
SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.3  
SB_22256| Best HMM Match : zf-CCHC (HMM E-Value=0.0025)                29   3.0  
SB_11191| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_13237| Best HMM Match : zf-CCHC (HMM E-Value=0.0076)                28   6.9  
SB_1753| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.1  
SB_12488| Best HMM Match : PAN (HMM E-Value=0.0087)                    28   9.1  
SB_7017| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.1  

>SB_33392| Best HMM Match : zf-CCHC (HMM E-Value=0.043)
          Length = 348

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = +1

Query: 253 CLEFGHWSYECKGKRKILVRPSRTRIMHKNLKAKEEGQCSNGSCKIP 393
           CL+ GH   EC+ K+K  + PS     H  L A      +N    IP
Sbjct: 20  CLKRGHPQRECRSKKKCEIVPSCPYFHHPLLHAHSPPASANAVTPIP 66


>SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 215

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 226 FPQGIRCQKCLEFGHWSYEC 285
           +P   RC +C E GH SYEC
Sbjct: 101 YPDKSRCYECGEGGHLSYEC 120


>SB_22256| Best HMM Match : zf-CCHC (HMM E-Value=0.0025)
          Length = 238

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +1

Query: 244 CQKCLEFGHWSYECKGKRKILVRPSRTRIMHKNLKA 351
           C  CL+ GH   EC+ K+K  + PS     H  L A
Sbjct: 19  CFSCLKRGHPQRECRSKKKCEIVPSCPYFPHPLLHA 54


>SB_11191| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1577

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +1

Query: 241 RCQKCLEFGHWSYECKGK 294
           RC +CL   H SYECK K
Sbjct: 357 RCFRCLRKNHRSYECKSK 374


>SB_13237| Best HMM Match : zf-CCHC (HMM E-Value=0.0076)
          Length = 558

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +1

Query: 232 QGIRCQKCLEFGHWSYECKGKR 297
           +G +C KC + GH++  CKG++
Sbjct: 41  RGKKCAKCFKSGHFAACCKGEK 62


>SB_1753| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 377

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = -2

Query: 565 NRCQIQNHCCSLNQTRSPIHC 503
           N C    HCC  N T   IHC
Sbjct: 25  NECSAFEHCCKGNCTAKRIHC 45


>SB_12488| Best HMM Match : PAN (HMM E-Value=0.0087)
          Length = 124

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -2

Query: 652 TSIKFKTHLRISIFPLALKRISTLTFSCLNRCQIQNHCCSLN 527
           +SI F  + R+  + +A++R  ++  SC  RC     C S N
Sbjct: 31  SSIAFTRNKRLLGYTIAIQRTPSV-LSCAQRCLTSRECASFN 71


>SB_7017| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1017

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +1

Query: 238 IRCQKCLEFGHWSYECKGK 294
           +RC KC + GH++  C+ K
Sbjct: 185 VRCDKCTKVGHFAVVCRSK 203


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,924,820
Number of Sequences: 59808
Number of extensions: 314100
Number of successful extensions: 1381
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1277
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1378
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)