Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11g01
         (740 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g49400.1 68418.m06113 zinc knuckle (CCHC-type) family protein...    50   2e-06
At5g66630.1 68418.m08398 LIM domain-containing protein contains ...    29   2.4  
At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein...    28   5.7  
At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein...    27   9.9  
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ...    27   9.9  
At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein...    27   9.9  

>At5g49400.1 68418.m06113 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 275

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
 Frame = +1

Query: 241 RCQKCLEFGHWSYECKGKRKILVRPSRT-RIMHKNLKAKEEGQCSNGS 381
           +CQKC + GHW+YECK +R  + RPSRT ++ +  L+ K      +GS
Sbjct: 99  QCQKCFQAGHWTYECKNERVYISRPSRTQQLKNPKLRTKPSVDDLDGS 146


>At5g66630.1 68418.m08398 LIM domain-containing protein contains low
           similarity to Pfam profile PF00412: LIM domain
          Length = 702

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = -3

Query: 168 QSHIQNLKGKINKIRG*LNICLELYCSNCNRSSIKIYRIKSANTSRGC 25
           ++H+ N +GK +K       C E YC  C    +K Y I      R C
Sbjct: 387 ENHVSNSRGKFHKS------CYERYCYVCKEKKMKTYNIHPFWEERYC 428


>At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 372

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 244 CQKCLEFGHWSYECKGK 294
           C KC + GHWS +C G+
Sbjct: 306 CYKCGKQGHWSRDCTGQ 322


>At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 551

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 8/62 (12%)
 Frame = +1

Query: 244 CQKCLEFGHWSYECKGKRKILVRPSRT-RIMHKNLKAKEEG-------QCSNGSCKIPNK 399
           C +C   GH++ EC    ++  R   T    HK+ K  +E          SNG  K   K
Sbjct: 358 CYRCNGSGHFARECPNSSQVSKRDRETSTTSHKSRKKNKENSEHDSTPHESNGKTKKKKK 417

Query: 400 KK 405
           KK
Sbjct: 418 KK 419


>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
           protein low similarity to splicing factor SC35
           [Arabidopsis thaliana] GI:9843653; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 261

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +1

Query: 241 RCQKCLEFGHWSYECKGKRKILVRPSRTRIMHKNLKAKEEGQ 366
           RC +C + GH SYEC  K ++  R        +  + +EEG+
Sbjct: 153 RCYECGDEGHLSYECP-KNQLGPRERPPPPKKRGRRKEEEGE 193


>At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 257

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = +1

Query: 184 HQAERKKQXXXXXXFPQGIRCQKCLEFGHWSYEC 285
           H A  +++      F QG  C  C   GH++ +C
Sbjct: 37  HDAPSRREREPRRAFSQGNLCNNCKRPGHFARDC 70


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,894,781
Number of Sequences: 28952
Number of extensions: 215242
Number of successful extensions: 626
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 626
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)