Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11f24
         (724 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28E12.02 ||SPBC9B6.13|RNA-binding protein|Schizosaccharomyce...    27   2.1  
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom...    27   2.1  
SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme Fub2|Schiz...    27   2.7  
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    27   3.6  
SPAC2F7.17 |||peptide chain release factor|Schizosaccharomyces p...    27   3.6  
SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce...    26   4.7  
SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    26   6.3  
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe...    25   8.3  

>SPBC28E12.02 ||SPBC9B6.13|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 663

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +3

Query: 129 YKENGEAEPENSEVEVF 179
           +KE GE  PENS+V+++
Sbjct: 346 FKEGGETSPENSKVKIY 362


>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +1

Query: 439 KSGEEIIPKTTKIERAKAMNNEKKSKFKSKILNRNYDDNF 558
           K+GE  +   + I   KA++ EK+      +L ++YD+ F
Sbjct: 284 KNGENGLENNSSIREIKALDVEKRYVLYESLLEQSYDNIF 323


>SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme
           Fub2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 628

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 21/68 (30%), Positives = 28/68 (41%)
 Frame = +1

Query: 205 VKDKTLNDSALNVLPETKKKGIYVEKRNFAQKTQVTKRLKTLPNQITRRRDNKQFLSSVL 384
           V  KT +    NV  E     I  ++ N A   Q       L N   RR  NKQ L + +
Sbjct: 83  VAAKTASSFNPNVKLEAYHANIKEDRFNVAWFRQFDLVFNALDNLDARRHVNKQCLLASV 142

Query: 385 NILSKGTT 408
            ++  GTT
Sbjct: 143 PLIESGTT 150


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1388

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 4/95 (4%)
 Frame = +1

Query: 283  RNFAQKTQ--VTKRLKTLPNQIT--RRRDNKQFLSSVLNILSKGTTSTQFPEPAPDKSGE 450
            +NF  K+   ++   KT P + T  RR+  K  + S   I S    +T+ P PA  +S +
Sbjct: 1203 QNFGIKSSPAISTNGKTQPKKQTANRRQSGKPNVKSAQKIES----ATRTPSPAISESRK 1258

Query: 451  EIIPKTTKIERAKAMNNEKKSKFKSKILNRNYDDN 555
            +   K TKIE       + +S+  S + +   D N
Sbjct: 1259 KPSSKDTKIETPS--REQSRSQTASPVKSEKDDGN 1291


>SPAC2F7.17 |||peptide chain release factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 396

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 15/58 (25%), Positives = 28/58 (48%)
 Frame = +3

Query: 3   HQIKNKKPHEHVNDKYN*KNIRTTQPQHENYSSYATVNIK*RYKENGEAEPENSEVEV 176
           HQ+ NK      ND    K I   +  H  YS + +++ +    +  EA+  ++EV++
Sbjct: 52  HQVNNKDQSAMTNDTDLAKRIARLRRVHNAYSKFKSLSEQISDLKQMEAQESDAEVKM 109


>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1004

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +1

Query: 286 NFAQKTQVTKRLKTLPNQITRRRDNKQFLSSVLNILSKGTT 408
           NF  K  V ++ +T   + T    N  F   V  +L+KGTT
Sbjct: 173 NFGLKVAVVRQTETAALKSTSSSRNTLFDRRVARVLTKGTT 213


>SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 536

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -2

Query: 366 LFVVASPCDLIWQRFQTFSHLCLLREVSLLD 274
           L V   P DL+     TF H+C + E S+ D
Sbjct: 222 LGVEGHPLDLVIDYHNTFEHICKILENSVKD 252


>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 871

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 14/59 (23%), Positives = 26/59 (44%)
 Frame = +1

Query: 388 ILSKGTTSTQFPEPAPDKSGEEIIPKTTKIERAKAMNNEKKSKFKSKILNRNYDDNFIV 564
           +LS G T+ +   PAP  +   ++    K+      NNE+  ++ S  L    + +  V
Sbjct: 756 VLSGGKTAIKLIPPAPGAAKAAVMFTPPKVHYFTCENNEELHRWSSAFLKATVERDMSV 814


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,420,863
Number of Sequences: 5004
Number of extensions: 43992
Number of successful extensions: 144
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)