Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte11f24
(724 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_52702| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.54
SB_50114| Best HMM Match : DUF1168 (HMM E-Value=1.7) 31 0.72
SB_45217| Best HMM Match : Linker_histone (HMM E-Value=4.4e-27) 31 0.95
SB_21621| Best HMM Match : FKBP_N (HMM E-Value=7.3) 31 1.2
SB_52694| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2
SB_21010| Best HMM Match : PHD (HMM E-Value=7e-10) 29 2.9
SB_20654| Best HMM Match : Helicase_C (HMM E-Value=2.3e-21) 28 6.7
SB_54872| Best HMM Match : NuiA (HMM E-Value=7.4) 28 8.8
SB_3577| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
>SB_52702| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 100
Score = 31.9 bits (69), Expect = 0.54
Identities = 20/75 (26%), Positives = 32/75 (42%)
Frame = +1
Query: 328 LPNQITRRRDNKQFLSSVLNILSKGTTSTQFPEPAPDKSGEEIIPKTTKIERAKAMNNEK 507
LP+Q DN++ VL +++ G T P P P KS K K AK+ +
Sbjct: 3 LPSQAATAEDNRRLGVQVLRVVNGGVAPTGLPRP-PGKSRFPFARKKAKATEAKSTLPDI 61
Query: 508 KSKFKSKILNRNYDD 552
+ + ++N D
Sbjct: 62 RDTNDNALVNMRTTD 76
>SB_50114| Best HMM Match : DUF1168 (HMM E-Value=1.7)
Length = 269
Score = 31.5 bits (68), Expect = 0.72
Identities = 20/75 (26%), Positives = 31/75 (41%)
Frame = +1
Query: 328 LPNQITRRRDNKQFLSSVLNILSKGTTSTQFPEPAPDKSGEEIIPKTTKIERAKAMNNEK 507
LP+Q DN++ VL ++ G T P P P KS K K AK+ +
Sbjct: 3 LPSQAATAEDNRRLGVQVLRVVKGGVAPTGLPRP-PGKSRFPFARKKAKATEAKSTLPDI 61
Query: 508 KSKFKSKILNRNYDD 552
+ + ++N D
Sbjct: 62 RDTNDNALVNMRTTD 76
>SB_45217| Best HMM Match : Linker_histone (HMM E-Value=4.4e-27)
Length = 228
Score = 31.1 bits (67), Expect = 0.95
Identities = 25/93 (26%), Positives = 44/93 (47%)
Frame = +1
Query: 250 ETKKKGIYVEKRNFAQKTQVTKRLKTLPNQITRRRDNKQFLSSVLNILSKGTTSTQFPEP 429
+TKK+G EK+ A++ ++ K+L+ + + + K+ SK TS P+
Sbjct: 87 DTKKEGEMAEKKAKAKERKLQKQLEKEAAEEEKVKKPKKSRDGEKTKKSKKVTSE--PKS 144
Query: 430 APDKSGEEIIPKTTKIERAKAMNNEKKSKFKSK 528
K ++ KTTK AK+ + KS +K
Sbjct: 145 PKVKKSKDKSTKTTKKSDAKSPKKDAKSPTTTK 177
>SB_21621| Best HMM Match : FKBP_N (HMM E-Value=7.3)
Length = 272
Score = 30.7 bits (66), Expect = 1.2
Identities = 18/74 (24%), Positives = 33/74 (44%)
Frame = +1
Query: 328 LPNQITRRRDNKQFLSSVLNILSKGTTSTQFPEPAPDKSGEEIIPKTTKIERAKAMNNEK 507
LP+Q DN++ + VL +++ G +T P P KS K + + + +
Sbjct: 3 LPSQAATAEDNRRLGAQVLRVVNGGVATTGLPR-TPGKSRFTFAKKAKATDAKSTLPDIR 61
Query: 508 KSKFKSKILNRNYD 549
+K K+ + R D
Sbjct: 62 DTKKKAFVNQRTTD 75
>SB_52694| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1450
Score = 29.9 bits (64), Expect = 2.2
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 409 STQFPEPAPDKSGEEIIPKTTKIERA 486
+T +PE P+K EE + TK+ERA
Sbjct: 517 ATAYPEAGPEKQTEETVSLGTKLERA 542
>SB_21010| Best HMM Match : PHD (HMM E-Value=7e-10)
Length = 389
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +1
Query: 421 PEPAPDKSGEEIIPKTTKIERAKAMNNEKKSKFKSKILNRNY 546
P P+P SG I+ TK E A+ ++K + +I R Y
Sbjct: 169 PRPSPLFSGSMIVRNITKEELARMTPEDRKKPYVCEICGRRY 210
>SB_20654| Best HMM Match : Helicase_C (HMM E-Value=2.3e-21)
Length = 1728
Score = 28.3 bits (60), Expect = 6.7
Identities = 28/112 (25%), Positives = 49/112 (43%)
Frame = +1
Query: 223 NDSALNVLPETKKKGIYVEKRNFAQKTQVTKRLKTLPNQITRRRDNKQFLSSVLNILSKG 402
NDS +++P G E RN + KR+ T +I + D+ + L V +G
Sbjct: 823 NDSREDIVPGQDGDG--AEARN----AKSDKRISTKQRRIVIKDDDAEELDVVRQ--ERG 874
Query: 403 TTSTQFPEPAPDKSGEEIIPKTTKIERAKAMNNEKKSKFKSKILNRNYDDNF 558
T S E + +E K I++ + E+K+++K + DD+F
Sbjct: 875 TESA---EKLKESKPKEKAKKKRSIDKKRVSPVERKARWKEYLEKFERDDDF 923
>SB_54872| Best HMM Match : NuiA (HMM E-Value=7.4)
Length = 303
Score = 27.9 bits (59), Expect = 8.8
Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Frame = +1
Query: 295 QKTQVTKRLKTLPNQITRRRD-NKQFLSSVLNILSKGTTSTQFPEPAPDKSGEEIIPKTT 471
+K Q+ L+ + + + R+ NK S +L SKG PE D EEII +
Sbjct: 159 RKRQLNILLEKMKGERSLRQQLNKARKSKMLKSRSKGCLLELLPEDPEDAMPEEIIVELG 218
Query: 472 KIERAKAMNNEKKSKFKSK 528
+I + +K K ++
Sbjct: 219 RIREDHQKSEAEKRKVMAR 237
>SB_3577| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1164
Score = 27.9 bits (59), Expect = 8.8
Identities = 14/58 (24%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Frame = +1
Query: 388 ILSKGTTSTQFPE----PAPDKSGEEIIPKTTKIERAKAMNNEKKSKFKSKILNRNYD 549
++S G T++Q P+ P PD + ++ + ++A+ ++ KF +L NY+
Sbjct: 711 LISTGETNSQVPDVLESPEPDDAQQQPSQVALPPDSSQAITRPRREKFYEYLLLENYE 768
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,439,599
Number of Sequences: 59808
Number of extensions: 314589
Number of successful extensions: 900
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 898
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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