Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11f24
         (724 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117202-20|CAB57898.4| 1205|Caenorhabditis elegans Hypothetical...    31   0.83 
AF000261-8|AAB52929.1|  376|Caenorhabditis elegans T box family ...    30   1.5  
Z80214-1|CAB02262.1|  500|Caenorhabditis elegans Hypothetical pr...    30   1.9  
AF134186-1|AAD55361.1| 1359|Caenorhabditis elegans XNP-1 protein.      30   1.9  
AF000196-11|AAC24256.1| 1359|Caenorhabditis elegans Human xnp ge...    30   1.9  

>AL117202-20|CAB57898.4| 1205|Caenorhabditis elegans Hypothetical
           protein Y47D3A.26 protein.
          Length = 1205

 Score = 31.1 bits (67), Expect = 0.83
 Identities = 29/102 (28%), Positives = 50/102 (49%)
 Frame = +1

Query: 226 DSALNVLPETKKKGIYVEKRNFAQKTQVTKRLKTLPNQITRRRDNKQFLSSVLNILSKGT 405
           + +L +L ETK K    EK     K  + +RL+TL N+   + D K++       L K  
Sbjct: 174 EESLKILKETKMK---TEKIQGLLK-YIDERLQTLENE---KEDLKEYQK-----LDKTK 221

Query: 406 TSTQFPEPAPDKSGEEIIPKTTKIERAKAMNNEKKSKFKSKI 531
            S ++     D + +E I + TK++  K   N+K +  KS++
Sbjct: 222 RSVEYT--MYDNTNKEAIKEKTKLDEQKVELNQKDNNVKSQL 261


>AF000261-8|AAB52929.1|  376|Caenorhabditis elegans T box family
           protein 18 protein.
          Length = 376

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = +1

Query: 382 LNILSKGTTSTQFPEPAPDKSGEEIIPKTTKIERAKAMNNEKKSKFKSKILNRNYD 549
           L  +S    S+ FP  AP+ S  ++ PK  +      + +EKK K   + L  N D
Sbjct: 50  LPAVSSELLSSSFPTNAPESSSRDLAPKQNQFTINVVLFDEKKKKNPEENLPANGD 105


>Z80214-1|CAB02262.1|  500|Caenorhabditis elegans Hypothetical
           protein C27D8.2 protein.
          Length = 500

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 17/65 (26%), Positives = 31/65 (47%)
 Frame = +1

Query: 235 LNVLPETKKKGIYVEKRNFAQKTQVTKRLKTLPNQITRRRDNKQFLSSVLNILSKGTTST 414
           +N  P+T K    VEK  F +K +  K+ K   ++ T+++     +  V N L++     
Sbjct: 340 INTDPKTVKTERSVEKNKFKKKQKEEKKAKKQISKSTKKKSKCACIEYVKNKLTEKKKKN 399

Query: 415 QFPEP 429
            F +P
Sbjct: 400 PFKDP 404


>AF134186-1|AAD55361.1| 1359|Caenorhabditis elegans XNP-1 protein.
          Length = 1359

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 28/126 (22%), Positives = 66/126 (52%), Gaps = 6/126 (4%)
 Frame = +1

Query: 211 DKTLNDSALNVLPETKKKG-IYVEKRNFAQKTQVTK-RLKTLPNQITRRRDNKQFLSSVL 384
           D+   +S + VLP+ KK+G + +   +  +K Q ++     +  ++++++  KQ  S   
Sbjct: 291 DEESEESDVEVLPQKKKRGAVTLISDSEDEKDQKSESEASDVEEKVSKKKAKKQESSESG 350

Query: 385 NILSKGTTST---QFPEPAPDKSGEEIIPKTTKIERAKAMNNEKKSKFKSKILNRNYDD- 552
           +  S+G+ +       +  P+K  + II  ++K+++ + ++ E+  K + K L +   + 
Sbjct: 351 SDSSEGSITVNRKSKKKEKPEKKKKGIIMDSSKLQK-ETIDAERAEKERRKRLEKKQKEF 409

Query: 553 NFIVLK 570
           N IVL+
Sbjct: 410 NGIVLE 415


>AF000196-11|AAC24256.1| 1359|Caenorhabditis elegans Human xnp gene
           related protein 1 protein.
          Length = 1359

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 28/126 (22%), Positives = 66/126 (52%), Gaps = 6/126 (4%)
 Frame = +1

Query: 211 DKTLNDSALNVLPETKKKG-IYVEKRNFAQKTQVTK-RLKTLPNQITRRRDNKQFLSSVL 384
           D+   +S + VLP+ KK+G + +   +  +K Q ++     +  ++++++  KQ  S   
Sbjct: 291 DEESEESDVEVLPQKKKRGAVTLISDSEDEKDQKSESEASDVEEKVSKKKAKKQESSESG 350

Query: 385 NILSKGTTST---QFPEPAPDKSGEEIIPKTTKIERAKAMNNEKKSKFKSKILNRNYDD- 552
           +  S+G+ +       +  P+K  + II  ++K+++ + ++ E+  K + K L +   + 
Sbjct: 351 SDSSEGSITVNRKSKKKEKPEKKKKGIIMDSSKLQK-ETIDAERAEKERRKRLEKKQKEF 409

Query: 553 NFIVLK 570
           N IVL+
Sbjct: 410 NGIVLE 415


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,385,756
Number of Sequences: 27780
Number of extensions: 245273
Number of successful extensions: 713
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)