Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11f24
         (724 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   3.9  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    22   5.1  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        22   6.7  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   8.9  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   8.9  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -2

Query: 48  IYHLRVHAVSCF 13
           I+HL  HAV+CF
Sbjct: 370 IHHLARHAVACF 381



 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +1

Query: 427 PAPDKSGEEIIPKTTK 474
           P+ ++S  EI+PKTT+
Sbjct: 550 PSENQSKMEILPKTTQ 565


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 10/35 (28%), Positives = 15/35 (42%)
 Frame = +3

Query: 33  HVNDKYN*KNIRTTQPQHENYSSYATVNIK*RYKE 137
           H N+ YN  N       + NY++Y  +     Y E
Sbjct: 91  HNNNNYNNNNYNNYNYNNNNYNNYKKLYYNINYIE 125


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +1

Query: 442 SGEEIIPKTTKIERAKAMNNEKKSKFKSKILNRNYDDNFIV 564
           S ++I  K   ++  + +NNE     K   LN N +D   V
Sbjct: 335 SSDDINTKAKCLQFREYLNNELGPAVKRIALNNNANDRLTV 375


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = -2

Query: 294 REVSLLDVNTFLLCLRQNIEGAIIKRF 214
           R+ + +D+N   LC +  +EG+  ++F
Sbjct: 176 RQPTSIDLNAVRLCFQVFLEGSQKRKF 202


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = -2

Query: 294 REVSLLDVNTFLLCLRQNIEGAIIKRF 214
           R+ + +D+N   LC +  +EG+  ++F
Sbjct: 176 RQPTSIDLNAVRLCFQVFLEGSQKRKF 202


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,621
Number of Sequences: 438
Number of extensions: 3209
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)