Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte11f24
(724 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g44785.2 68418.m05490 expressed protein contains Pfam PF05329... 32 0.44
At5g44785.1 68418.m05489 expressed protein contains Pfam PF05329... 32 0.44
At5g47660.1 68418.m05884 DNA-binding protein-related similar to ... 30 1.4
At2g19660.1 68415.m02297 DC1 domain-containing protein contains ... 30 1.8
At4g25190.1 68417.m03626 hypothetical protein contains Pfam pro... 29 3.1
At5g17160.1 68418.m02010 expressed protein 29 4.1
At2g03560.1 68415.m00316 F-box family protein (FBX7) identical t... 29 4.1
At5g23890.1 68418.m02806 expressed protein weak similarity to SP... 28 7.2
At2g48060.1 68415.m06015 hypothetical protein 28 7.2
At4g08880.1 68417.m01464 Ulp1 protease family protein contains P... 27 9.5
At2g14770.2 68415.m01669 Ulp1 protease family protein similar to... 27 9.5
At2g14770.1 68415.m01668 Ulp1 protease family protein similar to... 27 9.5
At1g06670.1 68414.m00707 DEIH-box RNA/DNA helicase identical to ... 27 9.5
>At5g44785.2 68418.m05490 expressed protein contains Pfam PF05329:
Protein of unknown function (DUF731)
Length = 442
Score = 31.9 bits (69), Expect = 0.44
Identities = 18/69 (26%), Positives = 33/69 (47%)
Frame = +1
Query: 331 PNQITRRRDNKQFLSSVLNILSKGTTSTQFPEPAPDKSGEEIIPKTTKIERAKAMNNEKK 510
P +T + N Q + LN + T++T+ P P+K I K + ++ K ++ E
Sbjct: 157 PPNVTYSQSNVQVMVQNLNFVQAATSTTKTISP-PEKEVTSIKKKPARSKKVKVIDEETS 215
Query: 511 SKFKSKILN 537
+ +K I N
Sbjct: 216 NSWKHLIEN 224
>At5g44785.1 68418.m05489 expressed protein contains Pfam PF05329:
Protein of unknown function (DUF731)
Length = 440
Score = 31.9 bits (69), Expect = 0.44
Identities = 18/69 (26%), Positives = 33/69 (47%)
Frame = +1
Query: 331 PNQITRRRDNKQFLSSVLNILSKGTTSTQFPEPAPDKSGEEIIPKTTKIERAKAMNNEKK 510
P +T + N Q + LN + T++T+ P P+K I K + ++ K ++ E
Sbjct: 157 PPNVTYSQSNVQVMVQNLNFVQAATSTTKTISP-PEKEVTSIKKKPARSKKVKVIDEETS 215
Query: 511 SKFKSKILN 537
+ +K I N
Sbjct: 216 NSWKHLIEN 224
>At5g47660.1 68418.m05884 DNA-binding protein-related similar to
GTL1 [Arabidopsis thaliana] GI:2664198
Length = 398
Score = 30.3 bits (65), Expect = 1.4
Identities = 21/106 (19%), Positives = 53/106 (50%), Gaps = 1/106 (0%)
Frame = +1
Query: 208 KDKTLNDSALNVLPETKKKGIYVEKRNFAQKTQ-VTKRLKTLPNQITRRRDNKQFLSSVL 384
+ + +++ +NV+ + + + I E+ Q+T+ +T+ + ++ R F+ SV
Sbjct: 192 RQEKMHNQLINVMEKMEVERIRREEAWRQQETERMTQNEEARKQEMARNLSLISFIRSVT 251
Query: 385 NILSKGTTSTQFPEPAPDKSGEEIIPKTTKIERAKAMNNEKKSKFK 522
+ +FP+P ++I+P+ K E+ ++ E++ KF+
Sbjct: 252 GDEIEIPKQCEFPQPL-----QQILPEQCKDEKCESAQREREIKFR 292
>At2g19660.1 68415.m02297 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 662
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -2
Query: 345 CDLIWQRFQTFSHLCLLREVSL 280
CDL WQ F F + CL R V+L
Sbjct: 448 CDLCWQSFTGFRYECLTRMVTL 469
>At4g25190.1 68417.m03626 hypothetical protein contains Pfam
profile: PF04484 family of unknown function (DUF566)
Length = 443
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +1
Query: 394 SKGTTSTQFPEPAPD-KSGEEIIPKTTKIERAKAMNNEKKSKFKSKILNR 540
S+ TT + P + D KSGE IIP R++ +NN + + ++ L +
Sbjct: 59 SQSTTRSSRPIGSSDSKSGENIIPARNSASRSQEINNGRSRESFARYLEQ 108
>At5g17160.1 68418.m02010 expressed protein
Length = 569
Score = 28.7 bits (61), Expect = 4.1
Identities = 20/77 (25%), Positives = 38/77 (49%)
Frame = +1
Query: 325 TLPNQITRRRDNKQFLSSVLNILSKGTTSTQFPEPAPDKSGEEIIPKTTKIERAKAMNNE 504
T PN R + K +++++ + + STQFP P+ KS + K K +N
Sbjct: 443 TAPNSPPRLEEAKVIKTTLVSPFAVESISTQFPRPS--KSTTPL-----KNSPLKLVNEN 495
Query: 505 KKSKFKSKILNRNYDDN 555
K++ + ++N N ++N
Sbjct: 496 KENNMEMMMMNVNNNEN 512
>At2g03560.1 68415.m00316 F-box family protein (FBX7) identical to
F-box protein family, AtFBX7 (GI:20197899) [Arabidopsis
thaliana]; contains F-box domain PF:00646
Length = 425
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 607 YSDQSRDVCKINSNNVTAIAKEVLEGKKTKRVTIDE 714
Y +SR +C N N++ KEV E K+ + IDE
Sbjct: 153 YFYKSRYICFDNCNSIRISEKEVFESKRAAVLWIDE 188
>At5g23890.1 68418.m02806 expressed protein weak similarity to
SP|P12957 Caldesmon (CDM) {Gallus gallus}
Length = 946
Score = 27.9 bits (59), Expect = 7.2
Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Frame = +1
Query: 325 TLPNQITRRRDNKQFLSSVLNILSKGTTSTQFP----EPAPDKSGEEIIPKTTKIERAKA 492
T P+ + RR+ ++L S + LS+ TTS +P E + + ++I P+ +
Sbjct: 454 TQPSDLCTRREYARWLISASSALSRNTTSKVYPAMYIENVTELAFDDITPEDPDFSSIQG 513
Query: 493 MNNEKKSKFKSKILNRNYDDN 555
+ + SK+ NR+ D+
Sbjct: 514 L--AEAGLIASKLSNRDLLDD 532
>At2g48060.1 68415.m06015 hypothetical protein
Length = 621
Score = 27.9 bits (59), Expect = 7.2
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +1
Query: 289 FAQKTQVTKRLKTLP-NQITRRRDNKQFLSSVLNILSKGTTSTQF 420
FA Q+ L+ LP ++ R R+N +FLSSVL +S G S F
Sbjct: 27 FAIHLQIHTHLQQLPFRELARIRENWKFLSSVL--VSGGLISLAF 69
>At4g08880.1 68417.m01464 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At3g24380, At5g36840,
At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
At2g05560, At1g34730, At1g27790, At1g34740, At1g27780,
At5g36850, At3g42730, At1g52020, At3g24390, At4g05280,
At1g25886, At4g03300
Length = 1463
Score = 27.5 bits (58), Expect = 9.5
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Frame = +1
Query: 397 KGTTSTQFPEPAPDKSGEEIIPKTT-KIERAKAM--NNEKKSKFKSKILNR 540
+G+ T+ P P D++ + IPK + + A A+ EKKS K++++ R
Sbjct: 707 EGSVGTEDPNPGSDEADKTDIPKNNDESDNATAVEAKEEKKSSPKTEVVIR 757
>At2g14770.2 68415.m01669 Ulp1 protease family protein similar to
At3g24380, At5g36840, At5g35010, At3g42740, At4g05290,
At2g14770, At3g43390, At2g05560, At4g08880, At1g34730,
At1g27790, At1g34740, At1g27780, At5g36850, At3g42730,
At1g52020, At3g24390, At4g05280, At1g25886, At4g03300;
contains Pfam profile PF02902: Ulp1 protease family,
C-terminal catalytic domain
Length = 1158
Score = 27.5 bits (58), Expect = 9.5
Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +1
Query: 397 KGTTSTQFPEPAPDKSGEEIIPKTT-KIERAKAMNNEKKSKFKSKI 531
+G+ T+ P P D++ + IPK + + A A+ E++ K K+
Sbjct: 831 EGSVETEDPNPGSDEADKTDIPKNNDESDNAAAVEAEEEKKSSPKV 876
>At2g14770.1 68415.m01668 Ulp1 protease family protein similar to
At3g24380, At5g36840, At5g35010, At3g42740, At4g05290,
At2g14770, At3g43390, At2g05560, At4g08880, At1g34730,
At1g27790, At1g34740, At1g27780, At5g36850, At3g42730,
At1g52020, At3g24390, At4g05280, At1g25886, At4g03300;
contains Pfam profile PF02902: Ulp1 protease family,
C-terminal catalytic domain
Length = 1139
Score = 27.5 bits (58), Expect = 9.5
Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +1
Query: 397 KGTTSTQFPEPAPDKSGEEIIPKTT-KIERAKAMNNEKKSKFKSKI 531
+G+ T+ P P D++ + IPK + + A A+ E++ K K+
Sbjct: 812 EGSVETEDPNPGSDEADKTDIPKNNDESDNAAAVEAEEEKKSSPKV 857
>At1g06670.1 68414.m00707 DEIH-box RNA/DNA helicase identical to
DEIH-box RNA/DNA helicase GB:BAA84364 GI:5881579
[Arabidopsis thaliana]
Length = 1576
Score = 27.5 bits (58), Expect = 9.5
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 3/71 (4%)
Frame = +1
Query: 325 TLPNQITRRRDNKQFLSSVLNILSK---GTTSTQFPEPAPDKSGEEIIPKTTKIERAKAM 495
T PN++ N + S L + +K G P D E+ P T+ +E A
Sbjct: 1147 TNPNELREHDPNTTPMGSKLELANKLGLGNMEESLPSNFAD-GNEQPDPNTSPVEDVSAA 1205
Query: 496 NNEKKSKFKSK 528
+KK + +SK
Sbjct: 1206 TKQKKMQSESK 1216
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,280,030
Number of Sequences: 28952
Number of extensions: 215562
Number of successful extensions: 614
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1575119672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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