Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11f21
         (778 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    26   0.45 
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    26   0.45 
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    26   0.45 
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    26   0.45 
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    25   1.0  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    25   1.0  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   5.5  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   7.3  

>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 25.8 bits (54), Expect = 0.45
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = -2

Query: 777 YTFLTYLNFNFRKYNNGRNVEKSNFRINIFQEV 679
           Y +  Y N+N   YNN    +   + IN  +++
Sbjct: 89  YKYSNYNNYNNNNYNNNNYKKLQYYNINYIEQI 121


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 25.8 bits (54), Expect = 0.45
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = -2

Query: 777 YTFLTYLNFNFRKYNNGRNVEKSNFRINIFQEV 679
           Y +  Y N+N   YNN    +   + IN  +++
Sbjct: 89  YKYSNYNNYNNNNYNNNNYKKLQYYNINYIEQI 121


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 25.8 bits (54), Expect = 0.45
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = -2

Query: 777 YTFLTYLNFNFRKYNNGRNVEKSNFRINIFQEV 679
           Y +  Y N+N   YNN    +   + IN  +++
Sbjct: 89  YKYSNYNNYNNNNYNNNNYKKLQYYNINYIEQI 121


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 25.8 bits (54), Expect = 0.45
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = -2

Query: 777 YTFLTYLNFNFRKYNNGRNVEKSNFRINIFQEV 679
           Y +  Y N+N   YNN    +   + IN  +++
Sbjct: 89  YKYSNYNNYNNNNYNNNNYKKLQYYNINYIEQI 121


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = -2

Query: 756 NFNFRKYNNGRNVEKSNFR-INIFQ 685
           N+N++ YNN  N +K  +  INI Q
Sbjct: 308 NYNYKNYNNNYNSKKLYYNIINIEQ 332


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = -2

Query: 756 NFNFRKYNNGRNVEKSNFR-INIFQ 685
           N+N++ YNN  N +K  +  INI Q
Sbjct: 319 NYNYKNYNNNYNSKKLYYNIINIEQ 343


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 242 PRETTKKSVDKSRRHNINRPTRLSRCES 325
           PR T  K    +R  +  RP+R + CES
Sbjct: 385 PRSTHLKVSGINRVGSTRRPSRRNSCES 412


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +1

Query: 664 CFICSHFLKYIYSEI*FLNIPAIVI 738
           C +C +F   IY+ +    IP  V+
Sbjct: 194 CVVCQNFFYQIYATLGSFYIPLFVM 218


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,058
Number of Sequences: 438
Number of extensions: 3615
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24396777
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)