Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11f20
         (699 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38795| Best HMM Match : M (HMM E-Value=2.4e-07)                     30   1.6  
SB_9774| Best HMM Match : DUF1572 (HMM E-Value=9.7)                    29   4.8  
SB_56500| Best HMM Match : Tctex-1 (HMM E-Value=0.0079)                28   6.3  

>SB_38795| Best HMM Match : M (HMM E-Value=2.4e-07)
          Length = 1447

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
 Frame = +2

Query: 191  WSSFRRASIKQQGKATAGSISAATKSASLKRLSATDSLA*Y---MISSHKYIKHL*RKMS 361
            +SS   +S KQ+  A    + A T+    +  ++ DS + Y   +++    I+    KMS
Sbjct: 859  YSSQSSSSAKQEADALKDEVKALTQQLLRQHDASLDSRSKYEKLIMNIRGEIEREREKMS 918

Query: 362  TEAQNTDAAVEQVTQEVKDV 421
            +E     + +EQ T+E KD+
Sbjct: 919  SERHTLASQLEQATRENKDL 938


>SB_9774| Best HMM Match : DUF1572 (HMM E-Value=9.7)
          Length = 504

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = -1

Query: 375 FCASVDIFLYKCLMYLCDDIIYYASESVADRRLSD 271
           F AS DI   +CL    D +IY AS +  D  L D
Sbjct: 153 FIASEDILQIQCLYPDTDSVIYIASPAALDPPLGD 187


>SB_56500| Best HMM Match : Tctex-1 (HMM E-Value=0.0079)
          Length = 502

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = +3

Query: 534 PSPMEKPSRSRKATNG*SKPKSLMERK*QQRTRP 635
           P P   P  SRK + G  KP SL E K ++ T P
Sbjct: 296 PPPTPPPKPSRKHSLGTRKPISLQESKQRRNTDP 329


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,183,155
Number of Sequences: 59808
Number of extensions: 404293
Number of successful extensions: 1029
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 946
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1024
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)