Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte11f20
(699 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g50260.1 68418.m06224 cysteine proteinase, putative similar t... 30 1.3
At3g16340.1 68416.m02066 ABC transporter family protein similar ... 30 1.3
At2g22795.1 68415.m02704 expressed protein 29 3.0
At1g77410.1 68414.m09015 beta-galactosidase, putative / lactase,... 29 3.0
At5g36230.1 68418.m04371 eIF4-gamma/eIF5/eIF2-epsilon domain-con... 29 3.9
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 29 3.9
At4g16280.1 68417.m02469 flowering time control protein / FCA ga... 29 3.9
At3g11720.1 68416.m01437 expressed protein 29 3.9
At3g24650.1 68416.m03095 abscisic acid-insensitive protein 3 (AB... 28 5.2
At1g65220.1 68414.m07394 eIF4-gamma/eIF5/eIF2-epsilon domain-con... 28 5.2
At4g37460.1 68417.m05302 tetratricopeptide repeat (TPR)-containi... 28 6.8
At3g28720.1 68416.m03586 expressed protein 28 6.8
At5g59460.1 68418.m07452 scarecrow-like transcription factor 11 ... 27 9.0
At3g55220.1 68416.m06133 splicing factor, putative contains CPSF... 27 9.0
At3g55200.1 68416.m06131 splicing factor, putative contains CPSF... 27 9.0
At3g31980.1 68416.m04050 hypothetical protein low similarity to ... 27 9.0
At3g30560.1 68416.m03867 hypothetical protein 27 9.0
At2g23480.1 68415.m02803 hypothetical protein contains Pfam prof... 27 9.0
At2g02170.1 68415.m00153 remorin family protein contains Pfam do... 27 9.0
At1g47610.1 68414.m05288 transducin family protein / WD-40 repea... 27 9.0
At1g45191.2 68414.m05184 glycosyl hydrolase family 1 protein Sin... 27 9.0
>At5g50260.1 68418.m06224 cysteine proteinase, putative similar to
cysteine endopeptidase precursor CysEP GI:2944446 from
[Ricinus communis]
Length = 361
Score = 30.3 bits (65), Expect = 1.3
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +1
Query: 523 IWRSQVRWKSHHALAKRQMDEASQSH*WKENNNNGH 630
+W RW+SHH +A+ ++A + + +K N + H
Sbjct: 34 LWELYERWRSHHTVARSLEEKAKRFNVFKHNVKHIH 69
>At3g16340.1 68416.m02066 ABC transporter family protein similar to
PDR5-like ABC transporter GI:1514643 from [Spirodela
polyrhiza]; contains Pfam profile: PF00005 ABC
transporter
Length = 1416
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +2
Query: 575 KWMKQAKVIDGKKITTTDTAIHFKKLKSVKLGIDDYQKFLD 697
KW K+ ++ TT H + KLG+DD QKF+D
Sbjct: 41 KWAALEKLPTFARLRTTIIHPHEDLVDVTKLGVDDRQKFID 81
>At2g22795.1 68415.m02704 expressed protein
Length = 734
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +2
Query: 362 TEAQNTDAAVEQVTQEVKDVKLENGNAPGASNGTSSKS 475
T+ Q+ ++ + QEVKDV+ + P + NG S++S
Sbjct: 693 TQEQSDSSSDTNLPQEVKDVRTDLETLPDSGNGGSNES 730
>At1g77410.1 68414.m09015 beta-galactosidase, putative / lactase,
putative similar to beta-galactosidase SP:P45582 from
[Asparagus officinalis]
Length = 815
Score = 29.1 bits (62), Expect = 3.0
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 321 HHTNTLNTYKEKCLLKHRIRMPLWSK 398
H N+L ++ CL K R +P+WSK
Sbjct: 769 HSPNSLAVVQKACLKKSRCSVPVWSK 794
>At5g36230.1 68418.m04371 eIF4-gamma/eIF5/eIF2-epsilon
domain-containing protein low similarity to SP|Q13144
Translation initiation factor eIF-2B epsilon subunit
(eIF-2B GDP-GTP exchange factor) {Homo sapiens};
contains Pfam profile PF02020:
eIF4-gamma/eIF5/eIF2-epsilon
Length = 411
Score = 28.7 bits (61), Expect = 3.9
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 362 TEAQNTDAAVEQVTQEVKDVKL 427
TE N D +E V Q++KD KL
Sbjct: 265 TEESNVDEVIESVKQQIKDAKL 286
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 28.7 bits (61), Expect = 3.9
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +2
Query: 371 QNTDAAVEQVTQEVKDVKLENGNAPGASNGTSSKSE 478
Q++ A+ Q+ Q+V+ ++ N N P + NG + K +
Sbjct: 523 QSSQQAISQLQQQVQSMQQPNQNLPLSQNGRAGKQQ 558
>At4g16280.1 68417.m02469 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 505
Score = 28.7 bits (61), Expect = 3.9
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +2
Query: 371 QNTDAAVEQVTQEVKDVKLENGNAPGASNGTSSKSE 478
Q++ A+ Q+ Q+V+ ++ N N P + NG + K +
Sbjct: 281 QSSQQAISQLQQQVQSMQQPNQNLPLSQNGRAGKQQ 316
>At3g11720.1 68416.m01437 expressed protein
Length = 542
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
Frame = +2
Query: 389 VEQVTQE--VKDVKLENGNAPGASNGTSSKSED 481
V ++ +E V D+K EN ++P +S+ +SS SED
Sbjct: 348 VPEIEEEECVDDLKEENKSSPSSSSSSSSSSED 380
>At3g24650.1 68416.m03095 abscisic acid-insensitive protein 3 (ABI3)
identical to abscisic acid-insensitive protein 3
GI:16146 SP:Q01593 from [Arabidopsis thaliana], (Plant
Cell 4 (10), 1251-1261 (1992))
Length = 720
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +1
Query: 571 RQMDEASQSH*WKENNNNGHGHSLQKTQIGKTRHRRLPEVS 693
RQ S H NNNN + + +TQIG+T P+++
Sbjct: 465 RQRRFLSHHHRHNNNNNNNNNNQQNQTQIGETCAAVAPQLN 505
>At1g65220.1 68414.m07394 eIF4-gamma/eIF5/eIF2-epsilon
domain-containing protein low similarity to SP|P47823
Translation initiation factor eIF-2B epsilon subunit
(eIF-2B GDP-GTP exchange factor) {Oryctolagus
cuniculus}; contains Pfam profile PF02020:
eIF4-gamma/eIF5/eIF2-epsilon
Length = 411
Score = 28.3 bits (60), Expect = 5.2
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = +2
Query: 329 KYIKHL*RKMSTEAQNTDAAVEQVTQEVKDVKL 427
K IK + TE N D E V Q+VKD KL
Sbjct: 254 KEIKAVLTSQVTEEINVDEVTEMVKQQVKDAKL 286
>At4g37460.1 68417.m05302 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile PF00515: TPR Domain
Length = 883
Score = 27.9 bits (59), Expect = 6.8
Identities = 20/78 (25%), Positives = 37/78 (47%)
Frame = +2
Query: 242 GSISAATKSASLKRLSATDSLA*YMISSHKYIKHL*RKMSTEAQNTDAAVEQVTQEVKDV 421
G SA ++A +K+L + L + + + I + + +TE+ A + K
Sbjct: 99 GYKSALQQTADVKQLLELEEL---LKDARREIDGILKSHATESPQETPAYHSEKSDEKSD 155
Query: 422 KLENGNAPGASNGTSSKS 475
KL+N + +SNG S +S
Sbjct: 156 KLDNHESGASSNGNSHES 173
>At3g28720.1 68416.m03586 expressed protein
Length = 687
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -2
Query: 695 LETSGSRRCRVLPI*VF*SEWPCPLLLFSFHQ 600
+E G+ RVLP+ VF + PLLL +HQ
Sbjct: 424 VEEEGNEFARVLPVYVFDLDINTPLLLDRYHQ 455
>At5g59460.1 68418.m07452 scarecrow-like transcription factor 11
(SCL11) identical to cDNA scarecrow-like 11 (SCL11)
mRNA, partial cds gi:4580526
Length = 172
Score = 27.5 bits (58), Expect = 9.0
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +3
Query: 468 VKARITPYLSRKPSRRFPNLEIPSPMEKPSRSRKATNG*SKPKS 599
+K + + +S + +R PN + P +KPS S K NG KPKS
Sbjct: 116 LKRKQSEVVSEEQNR--PN-KSPRSFDKPSPSNKKGNGFKKPKS 156
>At3g55220.1 68416.m06133 splicing factor, putative contains CPSF A
subunit region (PF03178); contains weak WD-40 repeat
(PF00400); similar to Splicing factor 3B subunit 3
(SF3b130)/spliceosomal protein/Splicing factor 3B subunit
3 (SAP 130)(KIAA0017)(SP:Q15393) Homo sapiens,
EMBL:HSAJ1443_1
Length = 1214
Score = 27.5 bits (58), Expect = 9.0
Identities = 25/101 (24%), Positives = 42/101 (41%), Gaps = 2/101 (1%)
Frame = +2
Query: 329 KYIKHL*RKMSTEAQNTDAAVEQVTQEVKDVK-LENGNAPGASNGTSSKSEDNALXXXXX 505
K++ H RK+ ++ A +E + E G NG + + E+ A
Sbjct: 782 KFVLHPKRKLLVIIESDQGAFTAEEREAARKECFEAGGVGENGNGNADQMENGA------ 835
Query: 506 XXXXXXXGDPKSDGK-AITLSQSDKWMKQAKVIDGKKITTT 625
DP SD + ++S+KW+ +V+D K TTT
Sbjct: 836 --DDEDKEDPLSDEQYGYPKAESEKWVSCIRVLDPKTATTT 874
>At3g55200.1 68416.m06131 splicing factor, putative contains CPSF A
subunit region (PF03178); contains weak WD-40 repeat
(PF00400); similar to Splicing factor 3B subunit 3
(SF3b130)/spliceosomal protein/Splicing factor 3B subunit
3 (SAP 130)(KIAA0017)(SP:Q15393) Homo sapiens,
EMBL:HSAJ1443_1
Length = 1214
Score = 27.5 bits (58), Expect = 9.0
Identities = 25/101 (24%), Positives = 42/101 (41%), Gaps = 2/101 (1%)
Frame = +2
Query: 329 KYIKHL*RKMSTEAQNTDAAVEQVTQEVKDVK-LENGNAPGASNGTSSKSEDNALXXXXX 505
K++ H RK+ ++ A +E + E G NG + + E+ A
Sbjct: 782 KFVLHPKRKLLVIIESDQGAFTAEEREAARKECFEAGGVGENGNGNADQMENGA------ 835
Query: 506 XXXXXXXGDPKSDGK-AITLSQSDKWMKQAKVIDGKKITTT 625
DP SD + ++S+KW+ +V+D K TTT
Sbjct: 836 --DDEDKEDPLSDEQYGYPKAESEKWVSCIRVLDPKTATTT 874
>At3g31980.1 68416.m04050 hypothetical protein low similarity to
SP|P07271 DNA repair and recombination protein PIF1,
mitochondrial precursor {Saccharomyces cerevisiae}
Length = 1099
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +3
Query: 108 NHDEHFVKITLQSSKRYDSRISRVLSNIGAHF 203
+HD+ F K+T + YD I VL N G F
Sbjct: 610 DHDDWFNKMTSEQKGIYDEIIKAVLENSGGIF 641
>At3g30560.1 68416.m03867 hypothetical protein
Length = 1473
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +3
Query: 111 HDEHFVKITLQSSKRYDSRISRVLSNIGAHFAAPVSSS 224
HD+ +T + K YD + VL+N G V+SS
Sbjct: 1017 HDDWLKMLTTEQKKVYDKIMDAVLNNKGGDICLNVASS 1054
>At2g23480.1 68415.m02803 hypothetical protein contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287
Length = 705
Score = 27.5 bits (58), Expect = 9.0
Identities = 24/118 (20%), Positives = 50/118 (42%)
Frame = +2
Query: 224 QGKATAGSISAATKSASLKRLSATDSLA*YMISSHKYIKHL*RKMSTEAQNTDAAVEQVT 403
Q ATA + +AA + + T+S + + +KH+ + + E TD ++
Sbjct: 83 QTTATAMATTAAPTTTAPTTAPTTESPMLDDSTFYDALKHIPAEETQENMQTDEVEDENE 142
Query: 404 QEVKDVKLENGNAPGASNGTSSKSEDNALXXXXXXXXXXXXGDPKSDGKAITLSQSDK 577
+E K E+G++ + G+ S SE+ + + DG A+ + ++
Sbjct: 143 KEEGSEKEESGSS-SQTLGSDSDSEETETNKEVACANPVEEAERQDDGLAVIEEEEER 199
>At2g02170.1 68415.m00153 remorin family protein contains Pfam
domain, PF03763: Remorin, C-terminal region
Length = 486
Score = 27.5 bits (58), Expect = 9.0
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Frame = +3
Query: 462 RPVKARITPYLSRKPSRRFPNLEIPSPMEKP------SRSRKATNG*SKPKSLMERK*QQ 623
R + +TP S++PSR + +P+ P S R+A+ K L E++ Q
Sbjct: 266 RDMGTEMTPIASQEPSRNGTPIRATTPIRSPISSEPSSPGRQASASPMSNKELSEKELQM 325
Query: 624 RTR 632
+TR
Sbjct: 326 KTR 328
>At1g47610.1 68414.m05288 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to En/Spm-like transposon protein (GI:2739374)
[Arabidopsis thaliana]
Length = 351
Score = 27.5 bits (58), Expect = 9.0
Identities = 11/36 (30%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +1
Query: 487 LIFQGSLQGVFQIWRSQVRWK-SHHALAKRQMDEAS 591
L+F GS G ++W+ ++R K + H+L + + + S
Sbjct: 189 LVFTGSADGTVKVWKREIRGKRTAHSLFQTLLKQES 224
>At1g45191.2 68414.m05184 glycosyl hydrolase family 1 protein Since
this genomic sequence region is unfinished, the
annotated gene may be missing a stop codon or start
codon
Length = 487
Score = 27.5 bits (58), Expect = 9.0
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +2
Query: 602 DGKKITTTDTAIHFKKLKSVKLGIDDYQKF 691
DG+K + DT +H +K+ + + D Y K+
Sbjct: 56 DGRKPSVWDTFLHCRKMDNGDIACDGYHKY 85
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,176,104
Number of Sequences: 28952
Number of extensions: 278840
Number of successful extensions: 802
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 801
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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