Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte11f19
(683 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0) 169 2e-42
SB_35225| Best HMM Match : Ribosomal_L18p (HMM E-Value=4e-30) 151 5e-37
SB_50387| Best HMM Match : HLH (HMM E-Value=8.2e-05) 29 2.7
SB_33613| Best HMM Match : PAS (HMM E-Value=0.0083) 29 2.7
SB_11523| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_43459| Best HMM Match : VWA (HMM E-Value=1.8e-23) 28 6.1
SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22) 28 6.1
SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048) 28 8.1
>SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0)
Length = 328
Score = 169 bits (410), Expect = 2e-42
Identities = 97/204 (47%), Positives = 119/204 (58%), Gaps = 37/204 (18%)
Frame = +2
Query: 119 RRREGKTDYYARKR------------------------LVVQDKNKYNTP------KYRL 208
RR +GKTDYYARKR ++ Q++NK P KYR
Sbjct: 17 RRSQGKTDYYARKRLITQDKNKYNTPKYRFVVRITNKDIICQERNKVGGPIFGSTQKYRR 76
Query: 209 IVRLS-NK------DVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXX 367
R NK ++AY++++GD ++ +AY+HELP +GVKVGLTNYAAAY TG
Sbjct: 77 NSRGKYNKRNIFILQTYARIAYAKLDGDRVLASAYAHELPNFGVKVGLTNYAAAYCTGLL 136
Query: 368 XXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMK 547
EYNVE VD PGAFRC+LDVGLART+TGARVFGA+K
Sbjct: 137 LARRLLTMLNLHEIYTGTDDVNGDEYNVESVDGSPGAFRCFLDVGLARTSTGARVFGALK 196
Query: 548 GAVDGGLNVPHSIKRFPGYDAESK 619
GAVDGGL +PHS+KRFPGYD+ESK
Sbjct: 197 GAVDGGLEIPHSMKRFPGYDSESK 220
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/21 (80%), Positives = 18/21 (85%)
Frame = +3
Query: 618 KKFNAEVHRAHIFGLHVAEYM 680
K F+AEVHR HIFG HVAEYM
Sbjct: 220 KDFSAEVHRNHIFGKHVAEYM 240
>SB_35225| Best HMM Match : Ribosomal_L18p (HMM E-Value=4e-30)
Length = 113
Score = 151 bits (366), Expect = 5e-37
Identities = 69/112 (61%), Positives = 80/112 (71%)
Frame = +2
Query: 245 VAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXX 424
+AY+++EGD I+CAAY+HELPRYGVKVGLTNYAAAY TG
Sbjct: 1 IAYAKLEGDVIICAAYAHELPRYGVKVGLTNYAAAYCTGLLLARRLLTKLNLHEIYTGTE 60
Query: 425 XXXXXEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPH 580
EYNVE +D PGAFRC+LDVGLART+TGARVFGA+KGAVDGGL +PH
Sbjct: 61 EVNGDEYNVESIDGSPGAFRCFLDVGLARTSTGARVFGALKGAVDGGLEIPH 112
>SB_50387| Best HMM Match : HLH (HMM E-Value=8.2e-05)
Length = 791
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -3
Query: 570 LRPPSTAPFIAPKTRAPVVVRAKPTSK*HLNAPGPLST 457
+RP PF+ P +RAP A PT+ P P S+
Sbjct: 356 MRPAHIGPFLYPDSRAPFSPLASPTASSDSGHPSPGSS 393
>SB_33613| Best HMM Match : PAS (HMM E-Value=0.0083)
Length = 624
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -3
Query: 570 LRPPSTAPFIAPKTRAPVVVRAKPTSK*HLNAPGPLST 457
+RP PF+ P +RAP A PT+ P P S+
Sbjct: 222 MRPAHIGPFLYPDSRAPFSPLASPTASSDSGHPSPGSS 259
>SB_11523| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = +2
Query: 206 LIVRLSNKDVTCQVAYSRIEGD-HIVC 283
L++ LS +D+TC V YS G+ H +C
Sbjct: 108 LLLYLSKRDITCPVPYSSRNGELHTMC 134
>SB_43459| Best HMM Match : VWA (HMM E-Value=1.8e-23)
Length = 232
Score = 28.3 bits (60), Expect = 6.1
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -2
Query: 142 ISFPFTTPLEFYLVPLEVLFVLHNFNESHILNLSYK 35
ISFPFTT E Y +V F+ N LNL+ +
Sbjct: 119 ISFPFTTRKEAYRQLSKVPFIAGTTNTQEALNLAQR 154
>SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3160
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +2
Query: 254 SRIEGDHIVCAAYSH-ELPRYGVKVGLTNYAAAY 352
++ GDH+ A+YSH ++ R+ V + L AAY
Sbjct: 133 AKYRGDHLDIASYSHQQIDRFAVLLDLWTNEAAY 166
>SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22)
Length = 3445
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -3
Query: 615 DSAS*PGNLLME*GTLRPPSTAPFIAPKTRAPV 517
D+ P +M T+RPP T F+ T+APV
Sbjct: 1653 DTTVAPETTVMPDTTMRPPKTDVFVTEATKAPV 1685
>SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2735
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +2
Query: 74 VKNKQYFKRYQVKFKRRREGKTDYYARKRLVV 169
VK+K+ KR K KR+ + K+D + RK+ ++
Sbjct: 228 VKHKRKQKRKSAKHKRKHKRKSDKHKRKQTLI 259
>SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048)
Length = 1952
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +2
Query: 59 GFVKVVKNKQYFKRYQVKFKRRREGKTDY 145
GF++ +K + RY VK R R DY
Sbjct: 1090 GFIEALKRRDVSSRYNVKHARFRRATNDY 1118
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,616,977
Number of Sequences: 59808
Number of extensions: 465649
Number of successful extensions: 1416
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1404
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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