Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte11f18
(664 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 30 0.34
SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual 28 1.0
SPAC13A11.03 |mcp7|mug32|meiosis specific coiled-coil protein Mc... 27 3.2
SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces... 26 4.2
SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr 2|||Ma... 26 4.2
SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c... 26 5.6
SPBC17A3.08 |||TatD|Schizosaccharomyces pombe|chr 2|||Manual 26 5.6
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz... 25 7.4
SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit Ssr2|Schizosa... 25 7.4
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 25 9.7
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 29.9 bits (64), Expect = 0.34
Identities = 23/122 (18%), Positives = 58/122 (47%)
Frame = -3
Query: 662 TNSNFNTSEG*LTKLTSVCRGSGCGEVFSTLAKAASLILGSG*GPMLATVQTLLTPALNA 483
T+S +TS + +S+ S S+ + ++ + S + + ++ + ++
Sbjct: 237 TSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISSSSSS 296
Query: 482 *LEKSRLSNGLEDTTLGAFFFSSTLAFLYLSTLSAYSNRTAYDNSQLSCSFSVPSAAGLT 303
+ S+ + ++ + FSSTL+ +S+ S++S+ +S +S S S PS++ +
Sbjct: 297 SSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSSSTISSSSSSPSSSSFS 356
Query: 302 KS 297
+
Sbjct: 357 ST 358
>SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 435
Score = 28.3 bits (60), Expect = 1.0
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +1
Query: 223 KIEDREGLRNIDSDFWKEAYNTYQKDLVSPAAEGTLNE 336
K+E + L+N+D + +K+ YN VSP G LN+
Sbjct: 19 KVEMKPFLKNLDKNLFKKTYNLVAAK-VSPKKVGLLNK 55
>SPAC13A11.03 |mcp7|mug32|meiosis specific coiled-coil protein
Mcp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 210
Score = 26.6 bits (56), Expect = 3.2
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Frame = +1
Query: 103 LFKLKLSALGHPNPEFFNCEDE--KEYRSVV-LWLE 201
L K +LS L H NPE F ++E K+Y LW +
Sbjct: 138 LLKTQLSNLNHCNPETFELKNENTKKYMEAANLWTD 173
>SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 735
Score = 26.2 bits (55), Expect = 4.2
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +1
Query: 451 NPLDNLDFSSQAFKAGVNRVCTVASIGPHPDPKIRLA 561
N +LDF +AF A + TV + P DPK L+
Sbjct: 355 NEEGSLDFLHRAFSATIKEYHTVWTATPRLDPKTGLS 391
>SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 614
Score = 26.2 bits (55), Expect = 4.2
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +1
Query: 541 DPKIRLAALAKVLKTSPHPEPLQTEVNLVNQPSD 642
+PK+ LA +A + T P EPL E +P D
Sbjct: 348 NPKLNLAFVAHLFNTHPGLEPLNEEEKPEIEPFD 381
>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 708
Score = 25.8 bits (54), Expect = 5.6
Identities = 17/70 (24%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Frame = +1
Query: 181 SVVLWLEDQKIRHYKIEDREGLRNIDSDFWKEAY-----NTYQKDLVSPAAEGTLNEQLN 345
S++ W D+++R+Y D + L ++ DF ++ +T Q ++ +N N
Sbjct: 353 SIIYWDADKELRNYPRLDAKKLWDLTEDFLDLSFSLSRLSTLQAAIIFLTGRPWINVAGN 412
Query: 346 W-LLSYAVRL 372
W +L+ A+ L
Sbjct: 413 WSILTRAIAL 422
>SPBC17A3.08 |||TatD|Schizosaccharomyces pombe|chr 2|||Manual
Length = 312
Score = 25.8 bits (54), Expect = 5.6
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = +1
Query: 460 DNLDFSSQAFKAGVNRVCTVASIGPHP 540
DN++ S +A N C +++G HP
Sbjct: 60 DNVENSEEALNLATNYECFTSTVGVHP 86
>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 25.4 bits (53), Expect = 7.4
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = -3
Query: 515 VQTLLTPALNA*LEKSRLSNGLEDTTLGAF 426
+Q T NA EKSR+ N LED T F
Sbjct: 90 LQLTETKCRNAESEKSRVENELEDLTSSLF 119
>SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit
Ssr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 503
Score = 25.4 bits (53), Expect = 7.4
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +1
Query: 139 NPEFFNCEDEKEYRSVVLWLEDQKIRHYKIEDREGL 246
NPEFFN + + S+ D I Y++E E L
Sbjct: 40 NPEFFNGKSPLKTPSIYKDYRDFMINSYRLEPNEYL 75
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 25.0 bits (52), Expect = 9.7
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +1
Query: 19 HVELHLVNFVKFTTICYLKTYSFLTMSNLFKLKLSALGHPNPEFFNCE 162
H ++L+N F +L ++F + LF L S L P P+FF+ E
Sbjct: 104 HDYVNLINARHFMIEHFLSLFAFCR-TILFSLLTSFLLVPPPQFFHSE 150
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,467,948
Number of Sequences: 5004
Number of extensions: 45546
Number of successful extensions: 136
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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