Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte11f18
(664 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z47075-2|CAA87380.1| 253|Caenorhabditis elegans Hypothetical pr... 39 0.003
DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-t... 31 0.55
AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-t... 31 0.55
AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel... 31 0.55
AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel... 31 0.55
Z81466-5|CAE45043.1| 1309|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z81466-4|CAB03868.2| 1311|Caenorhabditis elegans Hypothetical pr... 29 2.9
AF038613-11|AAB92054.2| 836|Caenorhabditis elegans Mammalian el... 29 3.9
U41012-4|AAA82296.2| 413|Caenorhabditis elegans Hypothetical pr... 28 6.8
Z92786-10|CAB07212.3| 984|Caenorhabditis elegans Hypothetical p... 27 9.0
U97012-5|AAK39149.1| 515|Caenorhabditis elegans Hypothetical pr... 27 9.0
AL021473-3|CAA16306.3| 984|Caenorhabditis elegans Hypothetical ... 27 9.0
>Z47075-2|CAA87380.1| 253|Caenorhabditis elegans Hypothetical
protein E02H1.5 protein.
Length = 253
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +1
Query: 445 SSNPLDNLDFSSQAFKAGVNRVCTVASIGP-HPDPKIRLAA 564
S NPL+ LD+SS F +C++ I HPDPK+ + A
Sbjct: 119 SQNPLNRLDYSSPNFAENARALCSILGISAHHPDPKVLMKA 159
>DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1797
Score = 31.5 bits (68), Expect = 0.55
Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Frame = +1
Query: 4 YLCYRHVELHLVNFVKFTTICYLKTYSFLTMSNLFKLKLSALGHPNPEFFNCEDEKEYRS 183
++CY LH V F + Y+ +Y + + +L+ L EF E+E ++
Sbjct: 1520 HMCYEMERLHNGEEVSFHDVLYMLSYRSVDIRKSLQLE-ELLQREELEFI-IEEEVAKQT 1577
Query: 184 VVLWLED--QKIRHYKIEDREGL 246
+ WLE +K+R+ +D EG+
Sbjct: 1578 IRTWLEGCLRKMRNPSQKDAEGV 1600
>AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1831
Score = 31.5 bits (68), Expect = 0.55
Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Frame = +1
Query: 4 YLCYRHVELHLVNFVKFTTICYLKTYSFLTMSNLFKLKLSALGHPNPEFFNCEDEKEYRS 183
++CY LH V F + Y+ +Y + + +L+ L EF E+E ++
Sbjct: 1554 HMCYEMERLHNGEEVSFHDVLYMLSYRSVDIRKSLQLE-ELLQREELEFI-IEEEVAKQT 1611
Query: 184 VVLWLED--QKIRHYKIEDREGL 246
+ WLE +K+R+ +D EG+
Sbjct: 1612 IRTWLEGCLRKMRNPSQKDAEGV 1634
>AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
c protein.
Length = 1913
Score = 31.5 bits (68), Expect = 0.55
Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Frame = +1
Query: 4 YLCYRHVELHLVNFVKFTTICYLKTYSFLTMSNLFKLKLSALGHPNPEFFNCEDEKEYRS 183
++CY LH V F + Y+ +Y + + +L+ L EF E+E ++
Sbjct: 1665 HMCYEMERLHNGEEVSFHDVLYMLSYRSVDIRKSLQLE-ELLQREELEFI-IEEEVAKQT 1722
Query: 184 VVLWLED--QKIRHYKIEDREGL 246
+ WLE +K+R+ +D EG+
Sbjct: 1723 IRTWLEGCLRKMRNPSQKDAEGV 1745
>AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
d protein.
Length = 1861
Score = 31.5 bits (68), Expect = 0.55
Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Frame = +1
Query: 4 YLCYRHVELHLVNFVKFTTICYLKTYSFLTMSNLFKLKLSALGHPNPEFFNCEDEKEYRS 183
++CY LH V F + Y+ +Y + + +L+ L EF E+E ++
Sbjct: 1584 HMCYEMERLHNGEEVSFHDVLYMLSYRSVDIRKSLQLE-ELLQREELEFI-IEEEVAKQT 1641
Query: 184 VVLWLED--QKIRHYKIEDREGL 246
+ WLE +K+R+ +D EG+
Sbjct: 1642 IRTWLEGCLRKMRNPSQKDAEGV 1664
>Z81466-5|CAE45043.1| 1309|Caenorhabditis elegans Hypothetical
protein C09H6.1b protein.
Length = 1309
Score = 29.1 bits (62), Expect = 2.9
Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Frame = +1
Query: 34 LVNFVKF-TTICYLKTYSFLTMSNLFKLKLSALGHPNPEFFNCEDEKEY-RSVVLWLEDQ 207
+VN K T+ T + N + K+ L C +E +S+ LW + +
Sbjct: 628 IVNHEKLHPTVVVANTNEAPVVKNEIEAKVEVLSKTVSSPVECTEESSLSKSIQLWCQRE 687
Query: 208 KIRHYKIEDREGLRNID 258
K+RH +++++ + ID
Sbjct: 688 KLRHPELDEQFTRKMID 704
>Z81466-4|CAB03868.2| 1311|Caenorhabditis elegans Hypothetical
protein C09H6.1a protein.
Length = 1311
Score = 29.1 bits (62), Expect = 2.9
Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Frame = +1
Query: 34 LVNFVKF-TTICYLKTYSFLTMSNLFKLKLSALGHPNPEFFNCEDEKEY-RSVVLWLEDQ 207
+VN K T+ T + N + K+ L C +E +S+ LW + +
Sbjct: 628 IVNHEKLHPTVVVANTNEAPVVKNEIEAKVEVLSKTVSSPVECTEESSLSKSIQLWCQRE 687
Query: 208 KIRHYKIEDREGLRNID 258
K+RH +++++ + ID
Sbjct: 688 KLRHPELDEQFTRKMID 704
>AF038613-11|AAB92054.2| 836|Caenorhabditis elegans Mammalian
elks/cast/erc/rab6 interactingprotein homolog protein 1
protein.
Length = 836
Score = 28.7 bits (61), Expect = 3.9
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1
Query: 535 HPDPKIRLAALAKVLKTSPHPEPL 606
HPDP I + A+A V+ +P P P+
Sbjct: 786 HPDPVISMNAMASVIPGAPLPAPV 809
>U41012-4|AAA82296.2| 413|Caenorhabditis elegans Hypothetical
protein C06A6.5 protein.
Length = 413
Score = 27.9 bits (59), Expect = 6.8
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Frame = +1
Query: 67 YLKTYSFLTMSNLFKLKLS-ALGH-PNPEFFNCEDEKEYRSVVLWLEDQKIRHYKIEDRE 240
Y T S ++N K +LS A+ + + N E +K R+VV WL+ ++
Sbjct: 118 YRSTRSVEALTNFVKFQLSTAINEFSSQDQLNQEMDKSKRNVVAWLKKDGPEFANLKKVA 177
Query: 241 GLRNIDSDFW 270
+ D FW
Sbjct: 178 SILREDCSFW 187
>Z92786-10|CAB07212.3| 984|Caenorhabditis elegans Hypothetical
protein Y20C6A.1 protein.
Length = 984
Score = 27.5 bits (58), Expect = 9.0
Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Frame = +1
Query: 40 NFVKFTTICYLKTYSFLTMSNLFKLKLSALGHPNPEFF--NCEDEKEYRSVVLWLE-DQK 210
+F K +T Y TYS LT+ LK L H PE+F N + R VV E K
Sbjct: 223 HFAKVSTGMYPNTYSELTL-----LKNHFLNHETPEYFELNYPESFNNRRVVKTSELFGK 277
Query: 211 IRHYKIE 231
+ H K++
Sbjct: 278 LFHVKLQ 284
>U97012-5|AAK39149.1| 515|Caenorhabditis elegans Hypothetical
protein C04E6.5 protein.
Length = 515
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +3
Query: 3 LSMLSSCRIAFG*FCEIYYNLLSKNLQFFNN 95
+ LSSC +F CE Y L+ KN+ +F+N
Sbjct: 160 MQALSSCH-SFALRCEQLYCLVRKNIDYFDN 189
>AL021473-3|CAA16306.3| 984|Caenorhabditis elegans Hypothetical
protein Y20C6A.1 protein.
Length = 984
Score = 27.5 bits (58), Expect = 9.0
Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Frame = +1
Query: 40 NFVKFTTICYLKTYSFLTMSNLFKLKLSALGHPNPEFF--NCEDEKEYRSVVLWLE-DQK 210
+F K +T Y TYS LT+ LK L H PE+F N + R VV E K
Sbjct: 223 HFAKVSTGMYPNTYSELTL-----LKNHFLNHETPEYFELNYPESFNNRRVVKTSELFGK 277
Query: 211 IRHYKIE 231
+ H K++
Sbjct: 278 LFHVKLQ 284
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,721,793
Number of Sequences: 27780
Number of extensions: 262418
Number of successful extensions: 682
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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