Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11f17
         (637 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          24   1.1  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      24   1.1  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   2.5  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 7/21 (33%), Positives = 15/21 (71%)
 Frame = +3

Query: 24  IRTYSQSFCYRFERFTFELNV 86
           +R  ++  C  +ERFT+++N+
Sbjct: 487 LRLKARRACMNYERFTYKINI 507


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 7/21 (33%), Positives = 15/21 (71%)
 Frame = +3

Query: 24  IRTYSQSFCYRFERFTFELNV 86
           +R  ++  C  +ERFT+++N+
Sbjct: 487 LRLKARRACMNYERFTYKINI 507


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
 Frame = -1

Query: 187 SVISCIGHCVP*ERTPANSKIHNSLSAFEAMFN---TTLSSNVNLSK 56
           SVIS  G  VP    PA+S   NS++  + + N   T +++N    K
Sbjct: 845 SVISMSGTTVPITSLPASSTSINSITVEKDVINDVKTQITTNTPAKK 891



 Score = 21.8 bits (44), Expect = 5.7
 Identities = 16/72 (22%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
 Frame = +3

Query: 312 RERKELSKLFDA--VEIMTTSRNRQPPNVQNMFSTLRLVERVVKKQLKEGQISESLAGKF 485
           +++K+   L  A  + I     N +   ++ +FSTL+  E    + L   + +E +  + 
Sbjct: 91  KQKKKKRSLMGAQGLSIRGLQINHEDETIRPVFSTLQRAEYPTNRSLFIREQTEEMYREM 150

Query: 486 QWEKLSTRQRRE 521
             E    R RR+
Sbjct: 151 LLEHKKRRARRD 162


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,650
Number of Sequences: 438
Number of extensions: 3213
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)