Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11f15
         (758 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0335 + 2652334-2652340,2652459-2652550,2652642-2653362,265...    33   0.33 
12_02_0454 + 19199063-19200757,19202201-19202287                       32   0.43 
08_02_1240 + 25504789-25504794,25505421-25505555,25505854-255059...    30   2.3  
01_06_0272 - 28065896-28065991,28066069-28066227,28066918-280669...    28   7.0  
05_06_0136 + 25928152-25928659,25928767-25928899,25928987-259290...    28   9.3  

>05_01_0335 +
           2652334-2652340,2652459-2652550,2652642-2653362,
           2653456-2653533,2653658-2653684,2653871-2653938,
           2654089-2654174,2654251-2654333,2654478-2654620,
           2654709-2654810,2654906-2655199,2655282-2655404,
           2655733-2656119
          Length = 736

 Score = 32.7 bits (71), Expect = 0.33
 Identities = 20/97 (20%), Positives = 49/97 (50%), Gaps = 3/97 (3%)
 Frame = +3

Query: 171 LDIQNRGPNRIVELNEAKCKQKVIVHRCNIFTRTAENIYDKCASYNLRYCPFGRFVKSNN 350
           LD+  +    I+ +    C Q+ + ++      +    +DK   ++L+YC +  F + +N
Sbjct: 561 LDLSGKQDREIIRVIVDCCLQEKMFNKYYAVLASKLCSHDKNHKFSLQYCIWDHFKELDN 620

Query: 351 HLVNVSKDVLILLCFLIANF---IVLMIIIFNISCDV 452
             +N S ++  L+  ++ANF   +  + ++ N++ +V
Sbjct: 621 MELNRSMNLAKLVAEMLANFTLSLATLKVVKNLAVEV 657


>12_02_0454 + 19199063-19200757,19202201-19202287
          Length = 593

 Score = 32.3 bits (70), Expect = 0.43
 Identities = 17/63 (26%), Positives = 34/63 (53%)
 Frame = -1

Query: 515 DELPICYDCTSPSSSLLNTKIDIAADIKDNYHQNNEIRNEETQ*DQHVFGNVDQMIVGLD 336
           +E+ + +D      S  +   D A ++ D   +  E+R+EE + D+H+ GN +Q +   D
Sbjct: 361 EEVDVGFDFQPAQESEESEFSDAAEELADELSEGLEVRDEEEKGDKHL-GNGEQKVGSYD 419

Query: 335 KTA 327
           +T+
Sbjct: 420 ETS 422


>08_02_1240 +
           25504789-25504794,25505421-25505555,25505854-25505964,
           25506091-25506183,25506264-25506884,25506970-25507143,
           25507239-25507464,25507560-25507651,25507744-25507842,
           25507936-25507984,25508071-25508124,25508312-25508484,
           25508561-25508632,25508713-25508808,25509032-25509048,
           25509704-25509875,25509973-25510071,25510381-25510484,
           25510940-25511126,25511212-25511220
          Length = 862

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = -1

Query: 575 SSNNVFHDSIDFS--IVPSHLVDELPICYDCTSPSSSLLN 462
           S +++ H++ DF   I P+HLVD   +  D  SP+  L N
Sbjct: 571 SDDDLHHENDDFKKEITPAHLVDSYQVIPDSYSPNPVLRN 610


>01_06_0272 -
           28065896-28065991,28066069-28066227,28066918-28066966,
           28067350-28067474,28067834-28068004,28068222-28068571,
           28069322-28069478
          Length = 368

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
 Frame = -1

Query: 566 NVFHDSID-----FSIVPSHLVDELPICYDCTSPSSSLLNTKI-DIAADIK 432
           N FH ++      F I  S    E P+C DC    S  ++ +I D+ ADIK
Sbjct: 148 NSFHSNVTVLKRAFEIATSQTQVEQPMCLDCMRLLSDKMDKEIEDVNADIK 198


>05_06_0136 +
           25928152-25928659,25928767-25928899,25928987-25929058,
           25929150-25929221,25929507-25929670,25929760-25930025,
           25930115-25930241,25930599-25930667,25930765-25930957,
           25931053-25931299,25931342-25931470,25932367-25932654
          Length = 755

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = -1

Query: 581 YISSNNVFHDSIDFSIVPSHLVDELPICYDCTSPSSSLLNTKIDIAADIKD 429
           Y S+N+  + S D +    H +D   I + CT+  S+   T  D+ A +++
Sbjct: 639 YTSNNSKPNSSYD-TYAADHSIDVADIAFKCTAQVSARRPTMTDVVAQLQE 688


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,275,562
Number of Sequences: 37544
Number of extensions: 329338
Number of successful extensions: 753
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)