Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11f15
         (758 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34756| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_38168| Best HMM Match : Lectin_C (HMM E-Value=7.9e-06)              29   3.1  
SB_33158| Best HMM Match : rve (HMM E-Value=7.5e-05)                   29   3.1  
SB_58255| Best HMM Match : zf-C2H2 (HMM E-Value=2.3)                   29   5.4  
SB_50253| Best HMM Match : HYR (HMM E-Value=2.6e-20)                   28   7.2  
SB_49487| Best HMM Match : Zip (HMM E-Value=0.014)                     28   7.2  
SB_28447| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_5269| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.5  
SB_10597| Best HMM Match : Gal-3-0_sulfotr (HMM E-Value=8.2e-34)       28   9.5  

>SB_34756| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 255

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 15/39 (38%), Positives = 24/39 (61%)
 Frame = +3

Query: 342 SNNHLVNVSKDVLILLCFLIANFIVLMIIIFNISCDVYF 458
           +N H +N+S  V+++L  L+  FIV+ I  F I   +YF
Sbjct: 94  ANMHKLNISLTVMVILMTLVP-FIVIAICYFQIISGLYF 131


>SB_38168| Best HMM Match : Lectin_C (HMM E-Value=7.9e-06)
          Length = 583

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 232 CLHFASFSSTIRFGPRFCMSKDA 164
           C H++SF  T   G R+C+ +DA
Sbjct: 105 CYHYSSFEETWTQGQRYCLDQDA 127


>SB_33158| Best HMM Match : rve (HMM E-Value=7.5e-05)
          Length = 848

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 16/56 (28%), Positives = 30/56 (53%)
 Frame = +3

Query: 273 AENIYDKCASYNLRYCPFGRFVKSNNHLVNVSKDVLILLCFLIANFIVLMIIIFNI 440
           A+N  DK +    R  P+ R     NH++ +  + +I++  +I   I+++III  I
Sbjct: 1   AKNSLDKASPQTHRRLPYQR-----NHIIVIIINTIIIIIIIIIIIIIIIIIIITI 51


>SB_58255| Best HMM Match : zf-C2H2 (HMM E-Value=2.3)
          Length = 213

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = -3

Query: 315 ILNYTKRIYHKYFLLFA*KCYSDERLLSVCTSLRSALRFDSARGFVCP 172
           +LN TK  + K+F +   +C+S ER+LS    + + L  + A+    P
Sbjct: 24  MLNQTKYEHKKHFCMSCLQCFSSERVLS--NHVENCLEINGAQAVKMP 69


>SB_50253| Best HMM Match : HYR (HMM E-Value=2.6e-20)
          Length = 525

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
 Frame = +3

Query: 138 GANDKCSLKASLDIQNRGPNRIVELNE--AKCKQKVIVHRCNIFTRTAENIYDKCASYNL 311
           G N +CS   +++I+ +G   ++  +   A C+    VH C +   +   IY   + YN 
Sbjct: 146 GNNARCSF--TVNIKRKGCPTLIPPHRGTATCQSFNNVHYCQVTCPSGAQIYKNPSQYNY 203

Query: 312 RYCPFGRFVKSN 347
             C  G +   N
Sbjct: 204 WTCSTGTWQPGN 215


>SB_49487| Best HMM Match : Zip (HMM E-Value=0.014)
          Length = 510

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -1

Query: 494 DCTSPSSSLLNTKIDIAADIKDNYHQNNEIRNEETQ*DQHV 372
           D +S S S+ N K  +  D  DN+HQN+   +     D+ +
Sbjct: 49  DVSSGSDSIENEKFTLRDDHTDNHHQNHHDHHHHHHHDKKI 89


>SB_28447| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 777

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/72 (19%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
 Frame = +3

Query: 81  CTLITATREKMPCKCTGIKGANDKCSLKASLDIQNRGPNRIVELNEAKC---KQKVIVHR 251
           C+++     K      G   + + C  +ASL++ +  P+R+++ + A      + V+ H 
Sbjct: 662 CSMLKQDHTKHQAVFVGCPSSVEVCEEEASLEMLHYVPSRVIQEDSALYIIEARAVVGHS 721

Query: 252 CNIFTRTAENIY 287
           C  + +    +Y
Sbjct: 722 CQAYVKKGGKVY 733


>SB_5269| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 457

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/38 (28%), Positives = 24/38 (63%)
 Frame = +3

Query: 342 SNNHLVNVSKDVLILLCFLIANFIVLMIIIFNISCDVY 455
           SN H++ +   ++I++  +I   ++++III  I  DV+
Sbjct: 132 SNGHIIIIIIIIIIIINIVIIVVVIIIIIIITIIVDVH 169


>SB_10597| Best HMM Match : Gal-3-0_sulfotr (HMM E-Value=8.2e-34)
          Length = 728

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/39 (28%), Positives = 24/39 (61%)
 Frame = +3

Query: 174 DIQNRGPNRIVELNEAKCKQKVIVHRCNIFTRTAENIYD 290
           +++  GP    +L E + K+K +++RC + TR+ +  Y+
Sbjct: 639 NVRAEGPEFYNDLEELQKKKKDVLNRCVLKTRSEDEAYN 677


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,000,085
Number of Sequences: 59808
Number of extensions: 413737
Number of successful extensions: 1202
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1201
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)