Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11f15
         (758 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g65230.1 68418.m08206 myb family transcription factor (MYB53)...    31   0.83 
At3g29630.1 68416.m03726 glycosyltransferase family protein cont...    29   3.4  
At1g65160.1 68414.m07388 ubiquitin carboxyl-terminal hydrolase f...    29   3.4  
At5g10880.1 68418.m01263 tRNA synthetase-related / tRNA ligase-r...    28   5.9  
At2g27150.1 68415.m03263 aldehyde oxidase 3 (AAO3) identical to ...    28   5.9  
At1g28490.1 68414.m03503 syntaxin 61 (SYP61) / osmotic stess-sen...    28   7.7  
At1g19520.1 68414.m02431 expressed protein                             28   7.7  

>At5g65230.1 68418.m08206 myb family transcription factor (MYB53)
           contains PFAM profile: myb DNA binding domain PF00249
          Length = 310

 Score = 31.1 bits (67), Expect = 0.83
 Identities = 18/54 (33%), Positives = 24/54 (44%)
 Frame = -1

Query: 674 KMFRFSLFIY*AFPEPIFSRPIQNINRNAIRYISSNNVFHDSIDFSIVPSHLVD 513
           +M +  LF Y   P P     I NIN N +  +   N    +ID   + SHL D
Sbjct: 169 EMAKLQLFQYLLQPSPA-PMSINNINPNILNLLIKENSVTSNIDLGFLSSHLQD 221


>At3g29630.1 68416.m03726 glycosyltransferase family protein
           contains Pfam profile: PF00201 UDP-glucoronosyl and
           UDP-glucosyl transferase
          Length = 448

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 30/111 (27%), Positives = 48/111 (43%)
 Frame = -1

Query: 596 RNAIRYISSNNVFHDSIDFSIVPSHLVDELPICYDCTSPSSSLLNTKIDIAADIKDNYHQ 417
           + A + +   N+F +SI F  V    VD LP+  + T   + L N+   + AD  D   +
Sbjct: 41  KKAQKQLEPLNLFPNSIHFENVTLPHVDGLPVGAETT---ADLPNSSKRVLADAMDLLRE 97

Query: 416 NNEIRNEETQ*DQHVFGNVDQMIVGLDKTAKGAVS*IIRSAFIINIFCCSR 264
             E++    + D   F  VD +     +    +VS  I SA  I +F   R
Sbjct: 98  QIEVKIRSLKPDLIFFDFVDWIPQMAKELGIKSVSYQIISAAFIAMFFAPR 148


>At1g65160.1 68414.m07388 ubiquitin carboxyl-terminal hydrolase
           family protein contains Pfam profile PF00443: Ubiquitin
           carboxyl-terminal hydrolase
          Length = 309

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/45 (28%), Positives = 28/45 (62%)
 Frame = -1

Query: 365 NVDQMIVGLDKTAKGAVS*IIRSAFIINIFCCSRENVTAMNDYFL 231
           + ++ I  L+ T   A++ I++S + IN+F  SRE+ +  +++ L
Sbjct: 25  DAEEPIGKLNATCVSALAMILKSIWNINVFASSREDESVFHEFLL 69


>At5g10880.1 68418.m01263 tRNA synthetase-related / tRNA
           ligase-related similar to SP|P07814 Bifunctional
           aminoacyl-tRNA synthetase [Includes: Glutamyl-tRNA
           synthetase (EC 6.1.1.17) (Glutamate--tRNA ligase);
           Prolyl-tRNA synthetase (EC 6.1.1.15) (Proline--tRNA
           ligase)] {Homo sapiens}; contains Pfam profile PF03129:
           Anticodon binding domain
          Length = 309

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -1

Query: 515 DELPICYDCTSPSSSLLNTKIDIAADIKDNY 423
           D   +C  C +  S+LL   I   ADI+DNY
Sbjct: 120 DYQELCDACEAVESTLLGAGIRAEADIRDNY 150


>At2g27150.1 68415.m03263 aldehyde oxidase 3 (AAO3) identical to
           GP:3172044:gnl:PID:d1029570:AB010080
          Length = 1332

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +3

Query: 117 CKCTGIKGANDKC-SLKASLDIQNRGPNRIVELNEAK 224
           C+CTG +   D C S  + +DI++ G N   +  E+K
Sbjct: 150 CRCTGYRPIVDACKSFASDVDIEDLGLNSFWKKGESK 186


>At1g28490.1 68414.m03503 syntaxin 61 (SYP61) / osmotic
           stess-sensitive mutant 1 (OSM1) identical to SP|Q946Y7
           Syntaxin 61 (AtSYP61) (Osmotic stess-sensitive mutant 1)
           {Arabidopsis thaliana}; identical to cDNA syntaxin of
           plants 61 (SYP61) GI:16041649
          Length = 245

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 8/23 (34%), Positives = 18/23 (78%)
 Frame = +3

Query: 366 SKDVLILLCFLIANFIVLMIIIF 434
           +K  ++++CFL+  FI+L +++F
Sbjct: 221 AKGQMMMICFLLVLFIILFVLVF 243


>At1g19520.1 68414.m02431 expressed protein
          Length = 372

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 268 RVKMLQR*TITFCLHFASFSSTIRFGPRFCMSKD 167
           R+ +L   T TFC +F++ +STI    R   S D
Sbjct: 13  RISLLSSKTPTFCRNFSAITSTISHSDRHLRSYD 46


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,752,921
Number of Sequences: 28952
Number of extensions: 294375
Number of successful extensions: 707
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)