Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte11f14
(523 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P63272 Cluster: Transcription elongation factor SPT4; n... 193 2e-48
UniRef50_Q9TZ93 Cluster: Transcription elongation factor SPT4; n... 148 9e-35
UniRef50_Q7S743 Cluster: Transcription elongation factor spt-4; ... 123 2e-27
UniRef50_Q5KB83 Cluster: Transcription elongation factor SPT4; n... 119 4e-26
UniRef50_A1CZA0 Cluster: Transcriptional elongation protein Spt4... 118 8e-26
UniRef50_Q4WU00 Cluster: Transcription elongation factor spt4; n... 111 7e-24
UniRef50_P63271-2 Cluster: Isoform 2 of P63271 ; n=1; Mus muscul... 107 1e-22
UniRef50_Q8SR92 Cluster: TRANSCRIPTION INITIATION PROTEIN; n=1; ... 105 5e-22
UniRef50_A2R9C7 Cluster: Cofactor: SPT4 of S. cerevisiae require... 101 1e-20
UniRef50_A3LNS8 Cluster: Predicted protein; n=2; Ascomycota|Rep:... 100 4e-20
UniRef50_Q94C60 Cluster: Transcription elongation factor SPT4 ho... 92 6e-18
UniRef50_P63271-3 Cluster: Isoform 3 of P63271 ; n=2; Eutheria|R... 91 1e-17
UniRef50_Q4I5W5 Cluster: Transcription elongation factor SPT4; n... 89 4e-17
UniRef50_Q4YU95 Cluster: Transcription factor, putative; n=5; Pl... 89 6e-17
UniRef50_P32914 Cluster: Transcription elongation factor SPT4; n... 85 9e-16
UniRef50_Q9P7K8 Cluster: Transcription elongation factor spt4; n... 83 3e-15
UniRef50_Q01ET3 Cluster: Spt4 Transcription elongation factor SP... 82 7e-15
UniRef50_Q4N8C8 Cluster: Transcription factor, putative; n=1; Th... 81 1e-14
UniRef50_P81205 Cluster: Transcription elongation factor SPT4; n... 80 3e-14
UniRef50_Q6FMX1 Cluster: Transcription elongation factor SPT4; n... 79 5e-14
UniRef50_A3FQ88 Cluster: Transcription factor, putative; n=1; Cr... 72 9e-12
UniRef50_Q54NF2 Cluster: Putative uncharacterized protein; n=1; ... 68 2e-10
UniRef50_UPI00004996AC Cluster: transcription initiation protein... 61 1e-08
UniRef50_A2FSB6 Cluster: Transcription initiation protein, putat... 60 3e-08
UniRef50_A7AWE9 Cluster: Transcription factor, putative; n=1; Ba... 58 2e-07
UniRef50_Q4UH88 Cluster: Possible transcription initiation prote... 52 4e-07
UniRef50_UPI000155CED1 Cluster: PREDICTED: similar to MGC84906 p... 56 7e-07
UniRef50_Q4DFX6 Cluster: Putative uncharacterized protein; n=2; ... 46 7e-04
UniRef50_Q38D81 Cluster: Putative uncharacterized protein; n=1; ... 41 0.015
UniRef50_A0CZM1 Cluster: Chromosome undetermined scaffold_32, wh... 38 0.11
UniRef50_A0MNM7 Cluster: Homogentisate 1,2-dioxygenase; n=1; Sus... 35 1.3
UniRef50_Q22W77 Cluster: EGF-like domain containing protein; n=1... 35 1.3
UniRef50_O01564 Cluster: Putative uncharacterized protein; n=2; ... 34 1.7
UniRef50_Q2TUU7 Cluster: Thyroid hormone receptor alpha; n=5; Sc... 33 3.0
UniRef50_A7RX02 Cluster: Predicted protein; n=1; Nematostella ve... 33 3.0
UniRef50_Q92093 Cluster: Vitellogenin precursor (VTG) [Contains:... 33 3.0
UniRef50_Q9XXQ9 Cluster: Putative uncharacterized protein hmit-1... 33 4.0
UniRef50_Q2TUU6 Cluster: Thyroid hormone receptor beta; n=2; Sch... 33 4.0
UniRef50_UPI0000584A1E Cluster: PREDICTED: similar to nuclear re... 33 5.2
UniRef50_UPI00015A41AD Cluster: UPI00015A41AD related cluster; n... 32 6.9
UniRef50_P79926 Cluster: Hepatocyte nuclear factor 4-beta; n=7; ... 32 6.9
UniRef50_Q93099 Cluster: Homogentisate 1,2-dioxygenase; n=85; ce... 32 6.9
UniRef50_A6LF28 Cluster: Sensor protein; n=1; Parabacteroides di... 32 9.2
UniRef50_A2DIJ0 Cluster: XRP2, putative; n=1; Trichomonas vagina... 32 9.2
>UniRef50_P63272 Cluster: Transcription elongation factor SPT4;
n=31; Eumetazoa|Rep: Transcription elongation factor
SPT4 - Homo sapiens (Human)
Length = 117
Score = 193 bits (470), Expect = 2e-48
Identities = 79/114 (69%), Positives = 103/114 (90%)
Frame = +1
Query: 85 MSIETVPKELRGLRACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNNFDGM 264
M++ETVPK+LR LRACL+CSL+KT DQFEY+GCDNCD +L+MK N++ VYDCTS++FDG+
Sbjct: 1 MALETVPKDLRHLRACLLCSLVKTIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFDGI 60
Query: 265 IAVMNPEDSWVCKWQRISRFCKGVYAISVSGRLPAGVIREMKSRGIAYRPRDTS 426
IA+M+PEDSWV KWQR+S F GVYA+SV+GRLP G++RE+KSRG+AY+ RDT+
Sbjct: 61 IAMMSPEDSWVSKWQRVSNFKPGVYAVSVTGRLPQGIVRELKSRGVAYKSRDTA 114
>UniRef50_Q9TZ93 Cluster: Transcription elongation factor SPT4; n=4;
Bilateria|Rep: Transcription elongation factor SPT4 -
Caenorhabditis elegans
Length = 120
Score = 148 bits (358), Expect = 9e-35
Identities = 63/116 (54%), Positives = 89/116 (76%), Gaps = 2/116 (1%)
Frame = +1
Query: 97 TVPKELRGLRACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNNFDGMIAVM 276
+VP +LR LRACL+CSL+K+ + F+ EGC+NC++ L +K +++ VYDCTS N+DGMIA M
Sbjct: 4 SVPADLRNLRACLLCSLVKSVESFQKEGCENCEDVLHLKGDEEKVYDCTSANYDGMIAAM 63
Query: 277 NPEDSWVCKWQRISRFCKGVYAISVSGRLPAGVIREMKSRGIAYRP--RDTSQR*K 438
+ +SWVCKWQ++ R KG+YAISVSG LP ++ E+KS G+ Y+P RD S + K
Sbjct: 64 SNNESWVCKWQKMQRKVKGMYAISVSGVLPNNIVSELKSLGVRYKPNQRDYSTQFK 119
>UniRef50_Q7S743 Cluster: Transcription elongation factor spt-4;
n=4; Pezizomycotina|Rep: Transcription elongation factor
spt-4 - Neurospora crassa
Length = 120
Score = 123 bits (297), Expect = 2e-27
Identities = 52/108 (48%), Positives = 73/108 (67%)
Frame = +1
Query: 103 PKELRGLRACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNNFDGMIAVMNP 282
P + R LRAC+VCS++ T+ +F EGC NC++FL ++ + D + CTS F+G+I + NP
Sbjct: 8 PGQQRYLRACMVCSIVMTYARFRDEGCPNCEDFLHLQGSPDQIDSCTSQVFEGIITIANP 67
Query: 283 EDSWVCKWQRISRFCKGVYAISVSGRLPAGVIREMKSRGIAYRPRDTS 426
+ SWV KWQR+ + KGVYA VSG+LP V ++ GI Y PRD S
Sbjct: 68 QKSWVAKWQRLDGYVKGVYATKVSGQLPDDVRTTLEDDGIQYIPRDGS 115
>UniRef50_Q5KB83 Cluster: Transcription elongation factor SPT4; n=1;
Filobasidiella neoformans|Rep: Transcription elongation
factor SPT4 - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 113
Score = 119 bits (287), Expect = 4e-26
Identities = 51/107 (47%), Positives = 76/107 (71%), Gaps = 1/107 (0%)
Frame = +1
Query: 103 PKELRG-LRACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNNFDGMIAVMN 279
PK R LRACLVCS++++ + F +GC NC++ L M+ + + V +CTS +DGMIA++
Sbjct: 3 PKSGRAELRACLVCSILQSTNDFLTQGCPNCEDILEMRGSAERVAECTSLLYDGMIAMIE 62
Query: 280 PEDSWVCKWQRISRFCKGVYAISVSGRLPAGVIREMKSRGIAYRPRD 420
P +SWV +WQRI + +G+YA+ V+GR P VI +++RG YRPRD
Sbjct: 63 PSESWVARWQRIDKRMRGIYAVRVTGRAPQDVIDAIEARGGVYRPRD 109
>UniRef50_A1CZA0 Cluster: Transcriptional elongation protein Spt4,
putative; n=5; Pezizomycotina|Rep: Transcriptional
elongation protein Spt4, putative - Neosartorya fischeri
(strain ATCC 1020 / DSM 3700 / NRRL 181)(Aspergillus
fischerianus (strain ATCC 1020 / DSM 3700 / NRRL 181))
Length = 122
Score = 118 bits (284), Expect = 8e-26
Identities = 49/113 (43%), Positives = 70/113 (61%)
Frame = +1
Query: 88 SIETVPKELRGLRACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNNFDGMI 267
S P + R LRAC+VCSL++ +F EGC NCD L ++ N D + +CTS F+G+I
Sbjct: 4 SFYVAPSQQRTLRACMVCSLVQLHSKFMREGCPNCDNVLGLRGNNDAIQECTSQVFEGLI 63
Query: 268 AVMNPEDSWVCKWQRISRFCKGVYAISVSGRLPAGVIREMKSRGIAYRPRDTS 426
+ +P SWV +WQR+ + G YA+ V+G LP VI ++ G+ Y PRD S
Sbjct: 64 TLRDPTTSWVARWQRLEGYVAGTYAVKVTGSLPDDVITNLEDSGVKYIPRDGS 116
>UniRef50_Q4WU00 Cluster: Transcription elongation factor spt4; n=2;
Aspergillus|Rep: Transcription elongation factor spt4 -
Aspergillus fumigatus (Sartorya fumigata)
Length = 156
Score = 111 bits (268), Expect = 7e-24
Identities = 45/109 (41%), Positives = 67/109 (61%)
Frame = +1
Query: 88 SIETVPKELRGLRACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNNFDGMI 267
S P + R LRAC+VCSL++ +F +GC NCD L ++ N D + +CTS F+G+I
Sbjct: 4 SYYVTPSQQRTLRACMVCSLVQLHSKFMRDGCPNCDNVLGLRGNNDAIQECTSQVFEGLI 63
Query: 268 AVMNPEDSWVCKWQRISRFCKGVYAISVSGRLPAGVIREMKSRGIAYRP 414
+ +P SWV +WQR+ + G YA+ V+G LP VI ++ G+ Y P
Sbjct: 64 TLRDPSTSWVARWQRLEGYVAGTYAVKVTGSLPDDVITNLEDSGVRYIP 112
>UniRef50_P63271-2 Cluster: Isoform 2 of P63271 ; n=1; Mus
musculus|Rep: Isoform 2 of P63271 - Mus musculus (Mouse)
Length = 87
Score = 107 bits (258), Expect = 1e-22
Identities = 43/62 (69%), Positives = 56/62 (90%)
Frame = +1
Query: 85 MSIETVPKELRGLRACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNNFDGM 264
M++ETVPK+LR LRACL+CSL+KT DQFEY+GCDNCD +L+MK N++ VYDCTS++FDG
Sbjct: 1 MALETVPKDLRHLRACLLCSLVKTIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFDGC 60
Query: 265 IA 270
+A
Sbjct: 61 LA 62
>UniRef50_Q8SR92 Cluster: TRANSCRIPTION INITIATION PROTEIN; n=1;
Encephalitozoon cuniculi|Rep: TRANSCRIPTION INITIATION
PROTEIN - Encephalitozoon cuniculi
Length = 116
Score = 105 bits (253), Expect = 5e-22
Identities = 49/102 (48%), Positives = 65/102 (63%)
Frame = +1
Query: 121 LRACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNNFDGMIAVMNPEDSWVC 300
LRACL CS IKT + F +GC+NC L MK N NV +CTS+ F G++A++ P +SWV
Sbjct: 13 LRACLGCSQIKTLNGFRKDGCENCP-MLNMKGNVTNVSECTSSKFKGVVALLQPSNSWVG 71
Query: 301 KWQRISRFCKGVYAISVSGRLPAGVIREMKSRGIAYRPRDTS 426
KWQRI F KG+YA+ V G L I++++ G Y R S
Sbjct: 72 KWQRIGEFRKGLYAMVVEGALSEDFIKDLEQHGRIYYERTES 113
>UniRef50_A2R9C7 Cluster: Cofactor: SPT4 of S. cerevisiae requires
metal binding for its function; n=1; Aspergillus
niger|Rep: Cofactor: SPT4 of S. cerevisiae requires
metal binding for its function - Aspergillus niger
Length = 100
Score = 101 bits (241), Expect = 1e-20
Identities = 39/91 (42%), Positives = 58/91 (63%)
Frame = +1
Query: 85 MSIETVPKELRGLRACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNNFDGM 264
MS P + R LRAC+VCSL++ +F EGC NCD L ++ N D + +CTS F+G+
Sbjct: 1 MSFYVAPSQQRTLRACMVCSLVQLHSKFMREGCPNCDNVLGLRGNNDAIQECTSQVFEGL 60
Query: 265 IAVMNPEDSWVCKWQRISRFCKGVYAISVSG 357
+ + +P SWV +WQR+ + G YA+ V+G
Sbjct: 61 VTLRDPTTSWVARWQRLDSYVPGTYAVKVTG 91
>UniRef50_A3LNS8 Cluster: Predicted protein; n=2; Ascomycota|Rep:
Predicted protein - Pichia stipitis (Yeast)
Length = 112
Score = 99.5 bits (237), Expect = 4e-20
Identities = 41/106 (38%), Positives = 70/106 (66%), Gaps = 2/106 (1%)
Frame = +1
Query: 115 RGLRACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDN-VYDCTSNNFDGMIAV-MNPED 288
R RAC++C +++ +F GC NC+ L + N++ V DCTS +F+G++A+ + +
Sbjct: 4 RSERACMLCGIVQPMKRFVDYGCPNCESLLHFQDNEEGQVQDCTSPSFEGLVALGQDNRN 63
Query: 289 SWVCKWQRISRFCKGVYAISVSGRLPAGVIREMKSRGIAYRPRDTS 426
SWV +W RI F G+YA+ V+G+LP +I +++++ + YRPRD S
Sbjct: 64 SWVARWLRIDSFNPGLYAVKVNGKLPPHIISDLEAQDVIYRPRDGS 109
>UniRef50_Q94C60 Cluster: Transcription elongation factor SPT4
homolog 2; n=9; Spermatophyta|Rep: Transcription
elongation factor SPT4 homolog 2 - Arabidopsis thaliana
(Mouse-ear cress)
Length = 116
Score = 92.3 bits (219), Expect = 6e-18
Identities = 38/82 (46%), Positives = 56/82 (68%)
Frame = +1
Query: 121 LRACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNNFDGMIAVMNPEDSWVC 300
LRACL C L+KT+DQF GC+NC F +M+ + + + + T+ NF+G+I+VM+P SW
Sbjct: 16 LRACLRCRLVKTYDQFRDAGCENCP-FFKMEEDHERIVEVTTPNFNGIISVMDPSRSWAA 74
Query: 301 KWQRISRFCKGVYAISVSGRLP 366
+W RI +F G Y ++VS LP
Sbjct: 75 RWLRIGKFAPGCYTLAVSEPLP 96
>UniRef50_P63271-3 Cluster: Isoform 3 of P63271 ; n=2; Eutheria|Rep:
Isoform 3 of P63271 - Mus musculus (Mouse)
Length = 99
Score = 91.5 bits (217), Expect = 1e-17
Identities = 37/55 (67%), Positives = 49/55 (89%)
Frame = +1
Query: 262 MIAVMNPEDSWVCKWQRISRFCKGVYAISVSGRLPAGVIREMKSRGIAYRPRDTS 426
+IA+M+PEDSWV KWQR+S F GVYA+SV+GRLP G++RE+KSRG+AY+ RDT+
Sbjct: 42 IIAMMSPEDSWVSKWQRVSNFKPGVYAVSVTGRLPQGIVRELKSRGVAYKSRDTA 96
>UniRef50_Q4I5W5 Cluster: Transcription elongation factor SPT4; n=1;
Gibberella zeae|Rep: Transcription elongation factor
SPT4 - Gibberella zeae (Fusarium graminearum)
Length = 99
Score = 89.4 bits (212), Expect = 4e-17
Identities = 39/93 (41%), Positives = 59/93 (63%), Gaps = 1/93 (1%)
Frame = +1
Query: 154 TFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNNFDGMIAVMNPEDSWVCKWQRISRFCKG 333
T +F+ EGC NC+EFL ++ + D + CTS F+G+I + NP SW+ K+QR+ + G
Sbjct: 2 TSQRFQNEGCPNCEEFLHLQHSPDQIESCTSQVFEGVITLANPTKSWIAKYQRLDSYVPG 61
Query: 334 VYAISVSGRLPAGVIREMKSR-GIAYRPRDTSQ 429
+YAI VSG+LP V ++ I Y PRD ++
Sbjct: 62 MYAIKVSGQLPDDVRSTLEDEYRIQYIPRDGTE 94
>UniRef50_Q4YU95 Cluster: Transcription factor, putative; n=5;
Plasmodium|Rep: Transcription factor, putative -
Plasmodium berghei
Length = 136
Score = 89.0 bits (211), Expect = 6e-17
Identities = 39/91 (42%), Positives = 58/91 (63%)
Frame = +1
Query: 121 LRACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNNFDGMIAVMNPEDSWVC 300
LRACL C L++T +F GC NC +FL+M ++ + DCT+ NF G IA+ P SW+
Sbjct: 46 LRACLSCRLLRTEAEFYQNGCSNC-KFLQMTGDRHRIQDCTTENFSGFIAITTPTKSWIA 104
Query: 301 KWQRISRFCKGVYAISVSGRLPAGVIREMKS 393
++ +S++ G YA+ V G LP IR++KS
Sbjct: 105 QYNDLSKYNPGFYALQVVGELPES-IRDLKS 134
>UniRef50_P32914 Cluster: Transcription elongation factor SPT4;
n=11; Saccharomycetales|Rep: Transcription elongation
factor SPT4 - Saccharomyces cerevisiae (Baker's yeast)
Length = 102
Score = 85.0 bits (201), Expect = 9e-16
Identities = 38/102 (37%), Positives = 58/102 (56%)
Frame = +1
Query: 124 RACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNNFDGMIAVMNPEDSWVCK 303
RAC++C +++T ++F +GC NC + +CTS +F+G++ + P SWV K
Sbjct: 5 RACMLCGIVQTTNEFNRDGCPNCQGIFEEAGV--STMECTSPSFEGLVGMCKPTKSWVAK 62
Query: 304 WQRISRFCKGVYAISVSGRLPAGVIREMKSRGIAYRPRDTSQ 429
W + G+YAI V GRLPA V+ + Y+PRD SQ
Sbjct: 63 WLSVDHSIAGMYAIKVDGRLPAEVVELLPH----YKPRDGSQ 100
>UniRef50_Q9P7K8 Cluster: Transcription elongation factor spt4; n=1;
Schizosaccharomyces pombe|Rep: Transcription elongation
factor spt4 - Schizosaccharomyces pombe (Fission yeast)
Length = 105
Score = 83.4 bits (197), Expect = 3e-15
Identities = 40/99 (40%), Positives = 57/99 (57%)
Frame = +1
Query: 124 RACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNNFDGMIAVMNPEDSWVCK 303
RACL+C ++ F +GC N D+V TS F+G++A+M+P +SWV +
Sbjct: 10 RACLICGIVLPHSVFANKGCPN--------DGVDDVETFTSPVFEGIMAMMSPTESWVAR 61
Query: 304 WQRISRFCKGVYAISVSGRLPAGVIREMKSRGIAYRPRD 420
WQRI F G+YA V G L V+ ++ RGI YRPR+
Sbjct: 62 WQRIDTFTPGIYATRVQGVLNEDVVESLRRRGINYRPRN 100
>UniRef50_Q01ET3 Cluster: Spt4 Transcription elongation factor SPT4;
n=2; Ostreococcus|Rep: Spt4 Transcription elongation
factor SPT4 - Ostreococcus tauri
Length = 115
Score = 82.2 bits (194), Expect = 7e-15
Identities = 32/81 (39%), Positives = 57/81 (70%), Gaps = 1/81 (1%)
Frame = +1
Query: 124 RACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNNFDGMIAVMNPED-SWVC 300
RAC+ C L+KTFDQF +GC+NC + L +K +++ V +CT+ ++ G++++++ E+ SWV
Sbjct: 25 RACIGCKLVKTFDQFIEDGCENC-QHLALKDDRERVSECTTTSYSGVVSLLSDENASWVG 83
Query: 301 KWQRISRFCKGVYAISVSGRL 363
KW + ++ G YA+ + G L
Sbjct: 84 KWLHLGKYACGCYALQLQGSL 104
>UniRef50_Q4N8C8 Cluster: Transcription factor, putative; n=1;
Theileria parva|Rep: Transcription factor, putative -
Theileria parva
Length = 140
Score = 81.4 bits (192), Expect = 1e-14
Identities = 41/93 (44%), Positives = 56/93 (60%), Gaps = 4/93 (4%)
Frame = +1
Query: 121 LRACLVCSLIKTFDQFE---YE-GCDNCDEFLRMKSNKDNVYDCTSNNFDGMIAVMNPED 288
LRAC+ C LI + DQ YE GC NC FL+M + DCTS NF+G I++M+P+
Sbjct: 47 LRACISCRLIMSEDQVSVTFYENGCGNCS-FLQMDGDHRRTLDCTSANFNGFISIMDPQK 105
Query: 289 SWVCKWQRISRFCKGVYAISVSGRLPAGVIREM 387
SW ++ +S G YAISV+G LP + E+
Sbjct: 106 SWSARYNNLSDLIPGCYAISVNGTLPESIKDEL 138
>UniRef50_P81205 Cluster: Transcription elongation factor SPT4; n=2;
Saccharomycetaceae|Rep: Transcription elongation factor
SPT4 - Kluyveromyces lactis (Yeast) (Candida sphaerica)
Length = 102
Score = 80.2 bits (189), Expect = 3e-14
Identities = 35/102 (34%), Positives = 55/102 (53%)
Frame = +1
Query: 124 RACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNNFDGMIAVMNPEDSWVCK 303
RAC++C L+++ +F GC NC + +CTS +F+G++ + P SWV +
Sbjct: 5 RACMLCGLVQSTAEFNRNGCPNCQSIFEEAGV--SAVECTSPSFEGLVGMCKPSRSWVAR 62
Query: 304 WQRISRFCKGVYAISVSGRLPAGVIREMKSRGIAYRPRDTSQ 429
W I + G+YA+ + GRLP V + Y+PRD SQ
Sbjct: 63 WMSIDSYIPGMYAVKIDGRLPIEVTELLPH----YKPRDGSQ 100
>UniRef50_Q6FMX1 Cluster: Transcription elongation factor SPT4; n=2;
Saccharomycetales|Rep: Transcription elongation factor
SPT4 - Candida glabrata (Yeast) (Torulopsis glabrata)
Length = 102
Score = 79.4 bits (187), Expect = 5e-14
Identities = 36/102 (35%), Positives = 56/102 (54%)
Frame = +1
Query: 124 RACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNNFDGMIAVMNPEDSWVCK 303
RAC++C +++T ++F GC NC + +CTS +F+G++ + P SWV K
Sbjct: 5 RACMLCGIVQTTNEFGRVGCPNCQGIFEEAGV--STMECTSPSFEGLVGMCKPTKSWVAK 62
Query: 304 WQRISRFCKGVYAISVSGRLPAGVIREMKSRGIAYRPRDTSQ 429
W + G+YA+ V GRLP V+ + Y+PRD SQ
Sbjct: 63 WLSVDANIPGMYAVKVDGRLPPEVVELLPH----YKPRDGSQ 100
>UniRef50_A3FQ88 Cluster: Transcription factor, putative; n=1;
Cryptosporidium parvum Iowa II|Rep: Transcription
factor, putative - Cryptosporidium parvum Iowa II
Length = 124
Score = 71.7 bits (168), Expect = 9e-12
Identities = 34/80 (42%), Positives = 49/80 (61%), Gaps = 1/80 (1%)
Frame = +1
Query: 121 LRACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNNFDGMIAVMNPEDSWVC 300
LRACL C +I + QF GC NC L M+ ++ V CTS +F GMI+++ P +SWV
Sbjct: 32 LRACLSCRIILSDQQFYEGGCPNCTH-LAMEFDRQKVNSCTSMSFKGMISMLKPNESWVA 90
Query: 301 KWQR-ISRFCKGVYAISVSG 357
++ + + G YA+SVSG
Sbjct: 91 RYNKLLPNIVPGCYAVSVSG 110
>UniRef50_Q54NF2 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 91
Score = 67.7 bits (158), Expect = 2e-10
Identities = 32/84 (38%), Positives = 50/84 (59%)
Frame = +1
Query: 100 VPKELRGLRACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNNFDGMIAVMN 279
VP + RAC C L+K+ QFE GC+NC S+ + T+ NF+G+IA+MN
Sbjct: 12 VPSSFKHARACTECGLVKSAQQFEDNGCENCS------SSSSS----TTQNFEGIIAIMN 61
Query: 280 PEDSWVCKWQRISRFCKGVYAISV 351
P++SW+ + + R G+YA+S+
Sbjct: 62 PKESWIARRLQFERRVPGLYALSM 85
>UniRef50_UPI00004996AC Cluster: transcription initiation protein
SPT4; n=1; Entamoeba histolytica HM-1:IMSS|Rep:
transcription initiation protein SPT4 - Entamoeba
histolytica HM-1:IMSS
Length = 128
Score = 61.3 bits (142), Expect = 1e-08
Identities = 30/84 (35%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Frame = +1
Query: 100 VPKELRGLRACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNNFDGMIAVMN 279
+P LR C +C LIK+ +QF+ +GCDNC + DN D S+NF GM++++
Sbjct: 26 IPSNFNTLRCCKICGLIKSQEQFQRDGCDNCKRYF------DNWEDYVSSNFTGMLSLLR 79
Query: 280 PEDSWVCKWQRI-SRFCKGVYAIS 348
P+ S++ K + + G+YA S
Sbjct: 80 PDRSFIGKVLGMKDTYVCGLYAAS 103
>UniRef50_A2FSB6 Cluster: Transcription initiation protein,
putative; n=1; Trichomonas vaginalis G3|Rep:
Transcription initiation protein, putative - Trichomonas
vaginalis G3
Length = 123
Score = 60.1 bits (139), Expect = 3e-08
Identities = 29/102 (28%), Positives = 54/102 (52%), Gaps = 1/102 (0%)
Frame = +1
Query: 97 TVPKELRGLRACLVCSLIKTFDQFEYEG-CDNCDEFLRMKSNKDNVYDCTSNNFDGMIAV 273
T+PK+ R + AC+ C LI+ D +++E C NC + SN+F+G++A+
Sbjct: 8 TLPKKSRSMAACIGCGLIQDRDVWKHETTCPNCGW------TATEIDSWVSNSFNGILAL 61
Query: 274 MNPEDSWVCKWQRISRFCKGVYAISVSGRLPAGVIREMKSRG 399
P+ SW W + ++ G+Y I G + +++ ++S G
Sbjct: 62 FQPQKSWCSSWLKYNKNVPGIYCIDNLGEVTDTIVQHLESYG 103
>UniRef50_A7AWE9 Cluster: Transcription factor, putative; n=1;
Babesia bovis|Rep: Transcription factor, putative -
Babesia bovis
Length = 136
Score = 57.6 bits (133), Expect = 2e-07
Identities = 31/85 (36%), Positives = 44/85 (51%)
Frame = +1
Query: 121 LRACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNNFDGMIAVMNPEDSWVC 300
LRACL C LI + DQ M ++ DCT+ NF G++++M+P+ SW
Sbjct: 60 LRACLSCRLIMSEDQ--------------MDGDRRRTLDCTTANFSGLLSIMDPQKSWAA 105
Query: 301 KWQRISRFCKGVYAISVSGRLPAGV 375
++ + G YAISV G LP V
Sbjct: 106 RYNSLVDVIPGCYAISVVGELPESV 130
>UniRef50_Q4UH88 Cluster: Possible transcription initiation protein
spt4-like, putatve; n=1; Theileria annulata|Rep:
Possible transcription initiation protein spt4-like,
putatve - Theileria annulata
Length = 230
Score = 52.4 bits (120), Expect(2) = 4e-07
Identities = 20/51 (39%), Positives = 33/51 (64%)
Frame = +1
Query: 166 FEYEGCDNCDEFLRMKSNKDNVYDCTSNNFDGMIAVMNPEDSWVCKWQRIS 318
F GC NC FL+M + + DCTS+NF+G I++++P+ SW ++ +S
Sbjct: 126 FYENGCGNCS-FLQMDGDHRRILDCTSSNFNGFISIIDPQKSWSARYNNLS 175
Score = 23.8 bits (49), Expect(2) = 4e-07
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1
Query: 331 GVYAISVSGRLPAGVIREM 387
G YAISV+G LP + E+
Sbjct: 210 GCYAISVNGTLPESIKDEL 228
>UniRef50_UPI000155CED1 Cluster: PREDICTED: similar to MGC84906
protein; n=1; Ornithorhynchus anatinus|Rep: PREDICTED:
similar to MGC84906 protein - Ornithorhynchus anatinus
Length = 64
Score = 55.6 bits (128), Expect = 7e-07
Identities = 22/35 (62%), Positives = 30/35 (85%)
Frame = +1
Query: 322 FCKGVYAISVSGRLPAGVIREMKSRGIAYRPRDTS 426
F GVYA+SV+GRLP G++RE+KSRG+ Y+ RDT+
Sbjct: 27 FKPGVYAVSVTGRLPQGIVRELKSRGVVYKSRDTA 61
>UniRef50_Q4DFX6 Cluster: Putative uncharacterized protein; n=2;
Trypanosoma cruzi|Rep: Putative uncharacterized protein
- Trypanosoma cruzi
Length = 218
Score = 45.6 bits (103), Expect = 7e-04
Identities = 25/76 (32%), Positives = 38/76 (50%)
Frame = +1
Query: 115 RGLRACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNNFDGMIAVMNPEDSW 294
RG AC C LI T QF +GC C ++D ++D T+ +F + ++ PE SW
Sbjct: 77 RGYLACRQCRLILTETQFIRDGCSVCG---TGPVSRDELHDVTTADFSNFVGLIAPEKSW 133
Query: 295 VCKWQRISRFCKGVYA 342
V + + GV+A
Sbjct: 134 VARMIGRTGCPNGVFA 149
>UniRef50_Q38D81 Cluster: Putative uncharacterized protein; n=1;
Trypanosoma brucei|Rep: Putative uncharacterized protein
- Trypanosoma brucei
Length = 271
Score = 41.1 bits (92), Expect = 0.015
Identities = 24/75 (32%), Positives = 35/75 (46%)
Frame = +1
Query: 118 GLRACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNNFDGMIAVMNPEDSWV 297
G AC C LI T QF +EGC C +++ + D + F I ++ PE SWV
Sbjct: 136 GYLACRRCRLIITEQQFLHEGCQVCG---TGPVSREELLDVATAEFSNFIGLIAPEKSWV 192
Query: 298 CKWQRISRFCKGVYA 342
+ + GV+A
Sbjct: 193 GRLINRTNCPNGVFA 207
>UniRef50_A0CZM1 Cluster: Chromosome undetermined scaffold_32, whole
genome shotgun sequence; n=3; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_32,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 94
Score = 38.3 bits (85), Expect = 0.11
Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Frame = +1
Query: 100 VPKELRGLRACLVCSLIKTFDQF-EYEGCDNCDEFLRMKSNKDNVYDCTSNNFDGMIAVM 276
+PK+++ LRAC C L+ T +Q+ + C N +++ +Y G+I VM
Sbjct: 18 IPKQIKDLRACQFCGLLLTLEQWNKITQCLN-----GCSADQTKIY-------SGVICVM 65
Query: 277 NPEDSWVCKWQRISR-FCKGVYAISV 351
P SWV K S+ G+YAI V
Sbjct: 66 KPSKSWVIKKLGNSKNIHPGLYAIDV 91
>UniRef50_A0MNM7 Cluster: Homogentisate 1,2-dioxygenase; n=1; Sus
scrofa|Rep: Homogentisate 1,2-dioxygenase - Sus scrofa
(Pig)
Length = 49
Score = 34.7 bits (76), Expect = 1.3
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = -2
Query: 435 LSLACVPWAIGNTSTLHFSYYTCWQPSRNRYCINS 331
LS+A W + ++ L +YY CW+P ++ + NS
Sbjct: 8 LSMAVTRWGLKTSNCLDENYYKCWEPLKSHFTPNS 42
>UniRef50_Q22W77 Cluster: EGF-like domain containing protein; n=1;
Tetrahymena thermophila SB210|Rep: EGF-like domain
containing protein - Tetrahymena thermophila SB210
Length = 2328
Score = 34.7 bits (76), Expect = 1.3
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +1
Query: 130 CLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTS 246
C+VCS + +D Y+ C NC+ +KDN CTS
Sbjct: 1309 CIVCSQSQVYDSVHYQ-CVNCNPTCLTCQDKDNTNKCTS 1346
Score = 33.9 bits (74), Expect = 2.3
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = +1
Query: 118 GLRACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNN 252
G + C C L + D + C NCD R +KDN+ CTS N
Sbjct: 946 GSKTCKSCQLNQVIDTIN-KICVNCDPSCRTCKDKDNLQACTSCN 989
>UniRef50_O01564 Cluster: Putative uncharacterized protein; n=2;
Caenorhabditis|Rep: Putative uncharacterized protein -
Caenorhabditis elegans
Length = 357
Score = 34.3 bits (75), Expect = 1.7
Identities = 28/106 (26%), Positives = 40/106 (37%)
Frame = +1
Query: 79 SIMSIETVPKELRGLRACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNNFD 258
S S E L G +AC+VC F CD C F R + Y C N
Sbjct: 10 SSSSPEMFALNLTGQKACVVCKRPANCYNFGVMSCDACKMFFRRTMLLNVQYVCRRKN-- 67
Query: 259 GMIAVMNPEDSWVCKWQRISRFCKGVYAISVSGRLPAGVIREMKSR 396
+DS+ C R C+ V + V +L + E+K++
Sbjct: 68 -----QCFDDSFSCLKTPYCRACRLVQCVKVGMKLNLSAMLEVKNQ 108
>UniRef50_Q2TUU7 Cluster: Thyroid hormone receptor alpha; n=5;
Schistosoma mansoni|Rep: Thyroid hormone receptor alpha
- Schistosoma mansoni (Blood fluke)
Length = 1115
Score = 33.5 bits (73), Expect = 3.0
Identities = 20/72 (27%), Positives = 30/72 (41%)
Frame = +1
Query: 118 GLRACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNNFDGMIAVMNPEDSWV 297
G C+VC T + C+ C F R K VY C ++G +V + ++
Sbjct: 198 GPEPCVVCGDNATGFHYRAMTCEGCKGFFRRSVQKKLVYTC---KYNGRCSVSDKQNRNS 254
Query: 298 CKWQRISRFCKG 333
C+ R R KG
Sbjct: 255 CQKCRFDRCIKG 266
>UniRef50_A7RX02 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 334
Score = 33.5 bits (73), Expect = 3.0
Identities = 29/99 (29%), Positives = 43/99 (43%), Gaps = 3/99 (3%)
Frame = -2
Query: 435 LSLAC-VPWAIGNTSTL-HFSYYTC-WQPSRNRYCINSFTKSTNSLPFANPAVFRIHYCN 265
+S AC +P+ + + L H Y+TC + P YCI+ +PF VF +H +
Sbjct: 246 ISPACFIPFTVFHLHVLSHLLYFTCMFYPI---YCISPAC----FIPFT---VFHLHVLS 295
Query: 264 HSIKVITCAIIDIIFVTFHAKKFITIVTAFIFKLVKCLY 148
H + TC + F FH FI + L LY
Sbjct: 296 HLL-YFTCMFYTVPFTVFHLHVFIPFTVFHLHVLSHLLY 333
>UniRef50_Q92093 Cluster: Vitellogenin precursor (VTG) [Contains:
Lipovitellin I (LVI); Phosvitin (PV); Lipovitellin II
(LVII)]; n=49; Elopocephala|Rep: Vitellogenin precursor
(VTG) [Contains: Lipovitellin I (LVI); Phosvitin (PV);
Lipovitellin II (LVII)] - Oncorhynchus mykiss (Rainbow
trout) (Salmo gairdneri)
Length = 1659
Score = 33.5 bits (73), Expect = 3.0
Identities = 16/59 (27%), Positives = 28/59 (47%)
Frame = -2
Query: 372 TCWQPSRNRYCINSFTKSTNSLPFANPAVFRIHYCNHSIKVITCAIIDIIFVTFHAKKF 196
T ++ N C F T+ PF + V +IHY + + C+++ TF+ KK+
Sbjct: 1348 TLYKLGVNLPCSLPFESMTDLSPFDDNIVNKIHYLFSEVNAVKCSMVRDTLTTFNNKKY 1406
>UniRef50_Q9XXQ9 Cluster: Putative uncharacterized protein hmit-1.2;
n=5; Caenorhabditis|Rep: Putative uncharacterized
protein hmit-1.2 - Caenorhabditis elegans
Length = 613
Score = 33.1 bits (72), Expect = 4.0
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = -2
Query: 342 CINSFTKSTNSLPFANPAVFRIHYCNHSIKVITCAIIDIIFVTF 211
C N KS +S P A V++ H+C S ++ ++ + +TF
Sbjct: 443 CTNGLDKSNSSFPNATSYVWQKHHCTTSYTILPIVMMGVYLLTF 486
>UniRef50_Q2TUU6 Cluster: Thyroid hormone receptor beta; n=2;
Schistosoma mansoni|Rep: Thyroid hormone receptor beta -
Schistosoma mansoni (Blood fluke)
Length = 847
Score = 33.1 bits (72), Expect = 4.0
Identities = 20/74 (27%), Positives = 29/74 (39%)
Frame = +1
Query: 112 LRGLRACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNNFDGMIAVMNPEDS 291
L G C+VC T + C+ C F R K +Y C F G +V + ++
Sbjct: 143 LAGPEPCVVCGDNATGFHYRAMTCEGCKGFFRRSVQKKLIYTC---KFQGRCSVSDKQNR 199
Query: 292 WVCKWQRISRFCKG 333
C+ R R G
Sbjct: 200 NSCQKCRFDRCISG 213
>UniRef50_UPI0000584A1E Cluster: PREDICTED: similar to nuclear
receptor AmNR2; n=1; Strongylocentrotus purpuratus|Rep:
PREDICTED: similar to nuclear receptor AmNR2 -
Strongylocentrotus purpuratus
Length = 448
Score = 32.7 bits (71), Expect = 5.2
Identities = 25/94 (26%), Positives = 38/94 (40%), Gaps = 3/94 (3%)
Frame = +1
Query: 124 RACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTS-NNFDGMIAVMNPEDSWVC 300
R CLVC T + C+ C F + K +Y C +N +G + N C
Sbjct: 63 RPCLVCGDRGTGCHYSVFSCEGCKGFFKRTVQKQLLYSCRGRSNMEGCCEI-NKTSRNSC 121
Query: 301 KWQRISR-FCKGVYAISV-SGRLPAGVIREMKSR 396
++ R + G+ +V RLP G + K R
Sbjct: 122 QFCRFQKCLTAGMKTDAVREDRLPGGKPKHKKLR 155
>UniRef50_UPI00015A41AD Cluster: UPI00015A41AD related cluster; n=1;
Danio rerio|Rep: UPI00015A41AD UniRef100 entry - Danio
rerio
Length = 468
Score = 32.3 bits (70), Expect = 6.9
Identities = 13/51 (25%), Positives = 21/51 (41%)
Frame = +1
Query: 88 SIETVPKELRGLRACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDC 240
S+ V + + C +C+ T + CD C F R K++ Y C
Sbjct: 49 SVPVVVPQQSSMSLCAICADRATGKHYGASSCDGCKGFFRRSVRKNHAYTC 99
>UniRef50_P79926 Cluster: Hepatocyte nuclear factor 4-beta; n=7;
Euteleostomi|Rep: Hepatocyte nuclear factor 4-beta -
Xenopus laevis (African clawed frog)
Length = 446
Score = 32.3 bits (70), Expect = 6.9
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Frame = +1
Query: 82 IMSIETVPKEL--RGLRA-CLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDC 240
I+++ET L G+ + C +C T + CD C F R K++VY C
Sbjct: 31 IITVETASPGLLNNGINSFCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHVYAC 86
>UniRef50_Q93099 Cluster: Homogentisate 1,2-dioxygenase; n=85;
cellular organisms|Rep: Homogentisate 1,2-dioxygenase -
Homo sapiens (Human)
Length = 445
Score = 32.3 bits (70), Expect = 6.9
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -2
Query: 435 LSLACVPWAIGNTSTLHFSYYTCWQPSRNRYCINS 331
LSLA W + + L +Y+ CW+P ++ + NS
Sbjct: 404 LSLAVTKWGLKASRCLDENYHKCWEPLKSHFTPNS 438
>UniRef50_A6LF28 Cluster: Sensor protein; n=1; Parabacteroides
distasonis ATCC 8503|Rep: Sensor protein -
Parabacteroides distasonis (strain ATCC 8503 / DSM 20701
/ NCTC11152)
Length = 769
Score = 31.9 bits (69), Expect = 9.2
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = -2
Query: 399 TSTLHFSYYTCWQPSRNRYCINSFTKSTNSLPFANPAVFRI 277
T L++S+Y + + NRY +++ K TNS F+ P +F +
Sbjct: 237 TGVLYYSWYRTRKDNENRYLVDNVQKMTNS--FSVPPIFTL 275
>UniRef50_A2DIJ0 Cluster: XRP2, putative; n=1; Trichomonas vaginalis
G3|Rep: XRP2, putative - Trichomonas vaginalis G3
Length = 311
Score = 31.9 bits (69), Expect = 9.2
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Frame = +1
Query: 64 LYIRCSIMSIETVPKELRG---LRACLVCSLIKTFDQFEYEGCDNCDEFLRMKS 216
++ RC+ E + +RG R C C + QF C+NCD F+ +K+
Sbjct: 115 IFDRCT--DCEFILSAVRGSIFARTCTNCKFVMITGQFRCRDCNNCDFFMHVKT 166
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 505,807,447
Number of Sequences: 1657284
Number of extensions: 10117494
Number of successful extensions: 30877
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 29472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30834
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 32619212418
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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