Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte11f12
(638 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.14c |hcs1|hcs|3-hydroxy-3-methylglutaryl-CoA synthase|Sc... 29 0.43
SPCC191.03c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 28 0.99
SPAC1002.02 |mug31||nucleoporin Pom34 |Schizosaccharomyces pombe... 28 1.3
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb... 26 4.0
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc... 26 4.0
SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit... 25 7.0
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 25 9.2
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 25 9.2
SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase |Schizosacch... 25 9.2
>SPAC4F8.14c |hcs1|hcs|3-hydroxy-3-methylglutaryl-CoA
synthase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 447
Score = 29.5 bits (63), Expect = 0.43
Identities = 17/52 (32%), Positives = 22/52 (42%)
Frame = +1
Query: 238 GKPPIVKPCYKQPKIPESYAPRRCYIKPSAPVEGCTTYKLSYLPVDGCKNLR 393
G I K + + P YAP C +A + C T LS +P D K R
Sbjct: 302 GLMAITKERFNKRVSPSVYAPTNCGNMYTASIFSCLTALLSRVPADELKGKR 353
>SPCC191.03c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 117
Score = 28.3 bits (60), Expect = 0.99
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = +1
Query: 229 CCCGKPPIVK--PCYKQPKIPESYAPRRCYIKPSAPVEGCTTYK 354
CC PP + P + P+I +P CY K P G T+Y+
Sbjct: 11 CCWVSPPSLTRLPAFPSPRI---LSPCYCYNKRIRPFRGLTSYR 51
>SPAC1002.02 |mug31||nucleoporin Pom34 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 229
Score = 27.9 bits (59), Expect = 1.3
Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 2/75 (2%)
Frame = +1
Query: 364 LPVDGCKNLRGEVKKPSPNIVPSCEPMEGCTVQKLSYLPNPVCVTQSIRPCH--HDMWGQ 537
LP D + + ++ PNI+PS E + + + P T +I H W
Sbjct: 41 LPTDPKASSLHKPQEQQPNIIPSKEEDKKPVINSMKLPSIPAPGTDNINESHIPRGYWKH 100
Query: 538 GPMQNITTQRHDYVP 582
+ I + HD P
Sbjct: 101 PAVDKIAKRLHDQAP 115
>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 26.2 bits (55), Expect = 4.0
Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 4/40 (10%)
Frame = +1
Query: 520 HDMWGQGPMQNITTQRHDYVPKPSI----LRESFKPAPKF 627
HD+W + ++ DY P P + ES+ P ++
Sbjct: 263 HDLWADDDQATVNQRKLDYAPAPKLPPPSHEESYNPPEEY 302
>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 379
Score = 26.2 bits (55), Expect = 4.0
Identities = 12/40 (30%), Positives = 16/40 (40%)
Frame = -1
Query: 251 MGGFPQQQDRHGQFGLMSPSMGFPSRRPDLIPAAGHGRHS 132
MGG D G FG + G P ++ G G H+
Sbjct: 146 MGGMDDDMDMDGGFGTRTRGGGMPGGFANMFGGGGAGPHA 185
>SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit
Rep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 472
Score = 25.4 bits (53), Expect = 7.0
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +2
Query: 539 VPCRTSPHNDTTTCPSRVYYERALSQHRNFTAS 637
+P R H+D+T C +R+ ++AL R + S
Sbjct: 355 IPMRVC-HSDSTLCDARIAAKQALKGKRQYDTS 386
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 25.0 bits (52), Expect = 9.2
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -3
Query: 342 ASLYGG*WFYVASSRRVRLWDFWLLV 265
+S+YG W ++ S+ V W +LLV
Sbjct: 2200 SSVYGRSWAFMWSAHNVHKWAMFLLV 2225
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 25.0 bits (52), Expect = 9.2
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 8/64 (12%)
Frame = +1
Query: 274 PKIPESYAPRRC--------YIKPSAPVEGCTTYKLSYLPVDGCKNLRGEVKKPSPNIVP 429
P+IP +Y P++ P+ P + T +L +P NL +V P P P
Sbjct: 221 PEIPPTYTPKQADPLPAPPPPPPPTLPPQSTNTSQLP-MPSRNVNNLGSQVNIPPPPATP 279
Query: 430 SCEP 441
S P
Sbjct: 280 SQPP 283
>SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 474
Score = 25.0 bits (52), Expect = 9.2
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +2
Query: 410 LRPTLYRAVNLWKGVPFKS 466
LRP Y+ N W G PF++
Sbjct: 347 LRPHAYQHFNTWMGDPFRA 365
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,928,957
Number of Sequences: 5004
Number of extensions: 68721
Number of successful extensions: 158
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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