Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11f10
         (692 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom...    29   0.64 
SPAC17G8.13c |mst2||histone acetyltransferase Mst2|Schizosacchar...    28   1.1  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    27   1.9  
SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein...    27   2.6  
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces...    26   4.5  
SPBC651.03c |gyp10||GTPase activating protein Gyp10|Schizosaccha...    26   5.9  
SPBC19G7.06 |mbx1||MADS-box transcription factor Mbx1|Schizosacc...    26   5.9  

>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 781

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +2

Query: 143 NKSTFSSNNIVIQPFLNTYNLQHYSLHVSMLILSVIGLAHAVIST 277
           N  T   N+  ++  L TY L H SLH +++ L     A +++ST
Sbjct: 594 NNGTLPLNHPYVRGCLATYELAHISLHTNIVALQT--YAKSIVST 636


>SPAC17G8.13c |mst2||histone acetyltransferase
           Mst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 407

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = -1

Query: 500 ENTNPKVLRLNPFLRPKILKHTLTKSKVAKVRQSRRLSNRNRH 372
           +  NPK+LR  P+L  + + + L K  +      +RL + + H
Sbjct: 361 QRVNPKLLRWTPYLGEEQISNLLLKENILIPLPQKRLLDNSHH 403


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 379  IDIITSMRSVGHR*PTRQSMR*FYYSYI 296
            ID+I  M    H   TRQ+ R  YYS++
Sbjct: 2025 IDLIRDMMVTNHTKSTRQTCRHLYYSFL 2052


>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 715

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 18/56 (32%), Positives = 25/56 (44%)
 Frame = +2

Query: 131 SCECNKSTFSSNNIVIQPFLNTYNLQHYSLHVSMLILSVIGLAHAVISTQTILELD 298
           SC      FSSN I   PF+NT  L   S  +    L ++   HA+ +    L+ D
Sbjct: 655 SCSLPIEPFSSN-ITDLPFVNTVTLASTSSKIKRAKLKMLKFKHAMTTQGRDLDSD 709


>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1155

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = +2

Query: 92  VEDCKINFRYDL*SCECNKSTFSSNNIVIQPFLNTYNLQHYSLHVSMLIL 241
           +EDC I +  D    +  K+TF S N       NT  L     H++ +I+
Sbjct: 815 LEDCLIIYSNDTDESDIVKNTFVSFNTTSNSLGNTTALSQLKGHINSVIV 864


>SPBC651.03c |gyp10||GTPase activating protein
           Gyp10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 373

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = -1

Query: 245 RLILTSTHARNNVVNYMYLEKAESQCYYLK--MSTYYIH 135
           +LIL    AR+  + Y YL KA+ QCY+    + T++ H
Sbjct: 164 QLILAVIKARDPTL-YEYLIKADIQCYFALSWLITWFAH 201


>SPBC19G7.06 |mbx1||MADS-box transcription factor
           Mbx1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 15/59 (25%), Positives = 26/59 (44%)
 Frame = -1

Query: 497 NTNPKVLRLNPFLRPKILKHTLTKSKVAKVRQSRRLSNRNRHNYFNALRRAPVTHTTVN 321
           N  P+     PFL PK   +  + S+  +    R  S +NR N    + R   +H +++
Sbjct: 206 NDVPQTDNFIPFLTPKRQAYGQSSSRADRSSVRRSQSFKNRRNGKPRISRLHTSHASID 264


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,371,875
Number of Sequences: 5004
Number of extensions: 39236
Number of successful extensions: 90
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)