Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11f10
         (692 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5023| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.67 
SB_5372| Best HMM Match : ER_lumen_recept (HMM E-Value=2.5e-19)        28   6.2  
SB_40561| Best HMM Match : Keratin_B2 (HMM E-Value=1.1)                28   8.3  

>SB_5023| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 469

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = -1

Query: 230 STHARNNVVNYMYLE-KAESQCYYLKMSTYYIHSFINHNEN*FYNLLH 90
           +++AR N  +Y YL     S   Y   S YY+ S++ HN N +Y + H
Sbjct: 382 TSYARFNSSSYYYLMYHMTSYAQYNSSSDYYLMSYVPHNAN-YYLMYH 428


>SB_5372| Best HMM Match : ER_lumen_recept (HMM E-Value=2.5e-19)
          Length = 229

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +2

Query: 155 FSSNNIVIQPFLNTYNLQHYSLHVSMLILSVIGLAHAVISTQTILEL 295
           F++  ++   F  TY+  H +  V  L++ V GLA  V    TI+EL
Sbjct: 148 FATLYLMYIKFKATYDSNHDTFRVEFLLIPVAGLACLVNHEFTIMEL 194


>SB_40561| Best HMM Match : Keratin_B2 (HMM E-Value=1.1)
          Length = 1139

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = -1

Query: 458 RPKILKHTLTKSKVAKVRQSRRLSNRNRHNYFNALRRAPVTHTTVN 321
           RP  +  T+T  ++     S  LS+R R  Y +  R AP+T T  N
Sbjct: 504 RPAPITTTITNHRLNCHTNSVILSSRKRPTYRSRKRPAPITTTITN 549


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,203,682
Number of Sequences: 59808
Number of extensions: 281492
Number of successful extensions: 562
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)