Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte11f09
(670 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0079 - 20732041-20732097,20732219-20732301,20732661-207328... 151 5e-37
01_06_1301 + 36122797-36122838,36122958-36123033,36123145-361232... 145 2e-35
01_01_0322 - 2589074-2589121,2589214-2589296,2589414-2589492,258... 132 2e-31
09_01_0088 + 1268120-1268139,1268288-1268361,1268500-1268750,126... 33 0.27
01_04_0083 - 15838922-15839065,15839153-15839443,15839555-158396... 31 1.1
04_04_0148 - 23114000-23114113,23114215-23114350,23114813-231149... 29 4.4
02_04_0056 + 19313422-19313967,19314035-19314168,19314263-193143... 28 5.9
01_05_0154 + 18667338-18670110,18670233-18670561,18670914-186709... 28 7.7
>09_06_0079 -
20732041-20732097,20732219-20732301,20732661-20732834,
20732927-20733059,20733226-20733310,20733527-20733650,
20733835-20733904,20734643-20734669,20734788-20734949
Length = 304
Score = 151 bits (366), Expect = 5e-37
Identities = 66/128 (51%), Positives = 88/128 (68%)
Frame = +1
Query: 286 KFVVGGNWKMNGDKNQINEIVNNLKKGPLDPNVEVIVGVPAIYLSYVKTIIPDNVEVAAQ 465
KF VGGNWK NG K+ ++++V L L+P+V+V+V P IY+ VK + D +EV+AQ
Sbjct: 54 KFFVGGNWKCNGTKDSVSKLVTELNAATLEPDVDVVVAPPFIYIDQVKNSLTDRIEVSAQ 113
Query: 466 NCWKSPKGAFTGEISPAMIKDVGVNWVILGHSERRTIFGEKDELVAEKVAHALESGLKVI 645
N W GA+TGEIS + D+G WVILGHSERR + GE D+ + +K A+AL +KVI
Sbjct: 114 NVWIGKGGAYTGEISAEQLVDIGCQWVILGHSERRHVIGEDDQFIGKKAAYALSQNVKVI 173
Query: 646 ACIGETLE 669
ACIGE LE
Sbjct: 174 ACIGELLE 181
>01_06_1301 +
36122797-36122838,36122958-36123033,36123145-36123268,
36123675-36123759,36124076-36124208,36124712-36124806,
36124982-36125060,36125205-36125287,36125505-36125555
Length = 255
Score = 145 bits (352), Expect = 2e-35
Identities = 70/131 (53%), Positives = 89/131 (67%), Gaps = 2/131 (1%)
Frame = +1
Query: 283 RKFVVGGNWKMNGDKNQINEIVNNLKKG--PLDPNVEVIVGVPAIYLSYVKTIIPDNVEV 456
RKF VGGNWK NG + +IV L + P + VEV+V P ++L VK ++ + V
Sbjct: 4 RKFFVGGNWKCNGTGEDVKKIVTVLNEAEVPSEDVVEVVVSPPFVFLPQVKGLLRPDFSV 63
Query: 457 AAQNCWKSPKGAFTGEISPAMIKDVGVNWVILGHSERRTIFGEKDELVAEKVAHALESGL 636
AAQNCW GAFTGEIS M+ ++ V WVILGHSERR + GE + VA+K+A+AL G+
Sbjct: 64 AAQNCWVRKGGAFTGEISAEMLVNLQVPWVILGHSERRALMGESSDFVADKIAYALSQGI 123
Query: 637 KVIACIGETLE 669
KVIACIGETLE
Sbjct: 124 KVIACIGETLE 134
>01_01_0322 -
2589074-2589121,2589214-2589296,2589414-2589492,
2589622-2589716,2590198-2590330,2590601-2590685,
2591040-2591163,2591297-2591372,2594305-2594319
Length = 245
Score = 132 bits (319), Expect = 2e-31
Identities = 61/122 (50%), Positives = 87/122 (71%), Gaps = 2/122 (1%)
Frame = +1
Query: 310 KMNGDKNQINEIVNNLKKGPLDPN--VEVIVGVPAIYLSYVKTIIPDNVEVAAQNCWKSP 483
++NG +Q+++IV L +G + VEV+V P ++L VK+ + ++VAAQNCW
Sbjct: 4 ELNGTTDQVDKIVKILNEGQIASTDVVEVVVSPPYVFLPVVKSQLRPEIQVAAQNCWVKK 63
Query: 484 KGAFTGEISPAMIKDVGVNWVILGHSERRTIFGEKDELVAEKVAHALESGLKVIACIGET 663
GAFTGE+S M+ ++ + WVILGHSERR++ GE +E V +KVA+AL GLKVIAC+GET
Sbjct: 64 GGAFTGEVSAEMLVNLSIPWVILGHSERRSLLGESNEFVGDKVAYALSQGLKVIACVGET 123
Query: 664 LE 669
LE
Sbjct: 124 LE 125
>09_01_0088 +
1268120-1268139,1268288-1268361,1268500-1268750,
1268845-1269048,1269488-1269805,1269893-1269910
Length = 294
Score = 32.7 bits (71), Expect = 0.27
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Frame = +1
Query: 220 LQLIHDIC*KVGSSNKITEMGRKFVVGG---NWKMNGDKNQINEIVNNLKKGPLDPNV 384
LQ H + +V S I+E+ RKF + G NW ++ ++ + + LKKG PN+
Sbjct: 95 LQWNHKLYKRVYYSKMISEVERKFAIDGRANNWILHQLDGKLRQYKSKLKKGYYKPNL 152
>01_04_0083 -
15838922-15839065,15839153-15839443,15839555-15839653,
15839733-15839825,15839913-15840116,15840209-15840459,
15841045-15841096,15841527-15841625,15842222-15842299
Length = 436
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Frame = +1
Query: 220 LQLIHDIC*KVGSSNKITEMGRKFVVGG---NWKMNGDKNQINEIVNNLKKGPLDPNVEV 390
LQ H + +V I+E+ RKF + G NW ++ + + + LKKG PN+ +
Sbjct: 140 LQWNHKLYKRVYHPKMISEVERKFAIDGRANNWNLHQLDGKWRQYKSKLKKGYYKPNLSM 199
>04_04_0148 -
23114000-23114113,23114215-23114350,23114813-23114912,
23115003-23115113,23115197-23115234,23115359-23115429,
23116998-23117176,23117272-23117389
Length = 288
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -2
Query: 465 LGCNFDIIRNDSLHIRQVNSRNTNNYL 385
LG NF++ RND L I V +N L
Sbjct: 104 LGLNFEVYRNDELTIEDVKRKNPRGIL 130
>02_04_0056 +
19313422-19313967,19314035-19314168,19314263-19314398,
19314870-19314923,19314995-19315135,19315220-19315546,
19315647-19315916,19316080-19316226,19316890-19317045,
19317223-19317290,19318210-19318309,19318696-19318985,
19319074-19319274,19319840-19319902,19320263-19320356,
19320964-19321035,19321979-19322077,19322254-19322376
Length = 1006
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 5/38 (13%)
Frame = +1
Query: 268 ITEMGRKFVVGGNWKMNGDKN-----QINEIVNNLKKG 366
+ ++ ++F+ GGN +NGD + I E+V L+KG
Sbjct: 709 LNKLAKRFLHGGNGAVNGDSSLPSRAYIEEVVQELQKG 746
>01_05_0154 +
18667338-18670110,18670233-18670561,18670914-18670939,
18671678-18671783
Length = 1077
Score = 27.9 bits (59), Expect = 7.7
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = -3
Query: 548 ITQFTPTSLIIAGEISPVKAPFGDFQQFWAATSTLSGMIVFT 423
+T +SL +AG ISPV Q +TLSG + FT
Sbjct: 80 VTSLNLSSLGLAGSISPVIGNLTFLQSLDLFNNTLSGDVYFT 121
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,142,941
Number of Sequences: 37544
Number of extensions: 289781
Number of successful extensions: 633
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 632
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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