Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11f09
         (670 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12178| Best HMM Match : TIM (HMM E-Value=0)                         89   4e-18
SB_5619| Best HMM Match : No HMM Matches (HMM E-Value=.)               54   8e-08
SB_2385| Best HMM Match : No HMM Matches (HMM E-Value=.)               44   1e-04
SB_44183| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  

>SB_12178| Best HMM Match : TIM (HMM E-Value=0)
          Length = 203

 Score = 88.6 bits (210), Expect = 4e-18
 Identities = 40/76 (52%), Positives = 55/76 (72%)
 Frame = +1

Query: 442 DNVEVAAQNCWKSPKGAFTGEISPAMIKDVGVNWVILGHSERRTIFGEKDELVAEKVAHA 621
           D++   AQNC +   GA+TGE+S AM+  +GVN+VI+GHSERR  F E +E +A+KV  A
Sbjct: 7   DHISTGAQNCHEKASGAYTGEVSAAMLAHLGVNYVIIGHSERREYFNESNEQLAQKVDAA 66

Query: 622 LESGLKVIACIGETLE 669
           L + L+VI C GE+LE
Sbjct: 67  LVNNLQVIFCCGESLE 82


>SB_5619| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 399

 Score = 54.4 bits (125), Expect = 8e-08
 Identities = 37/93 (39%), Positives = 50/93 (53%)
 Frame = +1

Query: 388 VIVGVPAIYLSYVKTIIPDNVEVAAQNCWKSPKGAFTGEISPAMIKDVGVNWVILGHSER 567
           ++V  PA+YLSYV+     N+ VAAQNC+K   GA              ++W        
Sbjct: 218 IVVSPPALYLSYVRKAAKQNIGVAAQNCYKVASGA--------------LHW-------- 255

Query: 568 RTIFGEKDELVAEKVAHALESGLKVIACIGETL 666
               G+  +L+ EKVAHAL + +KVIACIGE L
Sbjct: 256 ----GD--QLIGEKVAHALSANVKVIACIGELL 282


>SB_2385| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 122

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 18/36 (50%), Positives = 24/36 (66%)
 Frame = +1

Query: 277 MGRKFVVGGNWKMNGDKNQINEIVNNLKKGPLDPNV 384
           MGR+F VGGNWK+NG +  I E++    K  LD +V
Sbjct: 1   MGRRFFVGGNWKLNGSRASIQELLEAWGKADLDKSV 36



 Score = 40.7 bits (91), Expect = 0.001
 Identities = 16/42 (38%), Positives = 26/42 (61%)
 Frame = +1

Query: 379 NVEVIVGVPAIYLSYVKTIIPDNVEVAAQNCWKSPKGAFTGE 504
           + EV++  PA+Y  +++  +P    +A QN +K   GAFTGE
Sbjct: 79  DTEVVISPPAVYADFLRANMPAEFGLALQNVYKEGSGAFTGE 120


>SB_44183| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 751

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = -3

Query: 545 TQFTPTSLIIAGEISPVKAPFGDFQQFWAATSTLSGMIVFT*DR*IAGTPTITSTLG 375
           T  T   +II G +  +  PF      W  T+T+  + +F     + GTP  TS  G
Sbjct: 254 TWLTYIIMIILGHLVILSVPFFATSTAWTLTNTMHNLCMFLLLHYVKGTPFETSDQG 310


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,917,786
Number of Sequences: 59808
Number of extensions: 352769
Number of successful extensions: 762
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 761
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)