Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11f09
         (670 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23081-1|AAA79846.1|  247|Caenorhabditis elegans triosephosphate...   175   2e-44
AL023828-10|CAA19447.1|  247|Caenorhabditis elegans Hypothetical...   175   2e-44
U61944-2|AAL56621.1|  705|Caenorhabditis elegans Dynamin related...    32   0.42 
U61944-1|AAL56622.1|  712|Caenorhabditis elegans Dynamin related...    32   0.42 
AF166274-1|AAD49861.1|  705|Caenorhabditis elegans dynamin-relat...    32   0.42 
U58760-4|AAK31462.2|  678|Caenorhabditis elegans Hypothetical pr...    29   2.3  
AF077540-8|AAC26310.2|  683|Caenorhabditis elegans Btb and math ...    29   3.0  
AF016418-2|AAK18901.1|  893|Caenorhabditis elegans Hypothetical ...    28   6.9  

>U23081-1|AAA79846.1|  247|Caenorhabditis elegans triosephosphate
           isomerase protein.
          Length = 247

 Score =  175 bits (426), Expect = 2e-44
 Identities = 82/131 (62%), Positives = 99/131 (75%)
 Frame = +1

Query: 277 MGRKFVVGGNWKMNGDKNQINEIVNNLKKGPLDPNVEVIVGVPAIYLSYVKTIIPDNVEV 456
           M RKF VGGNWKMNGD   ++ IV  L     + +V+V+V  PA YL+Y K+ +   V V
Sbjct: 1   MTRKFFVGGNWKMNGDYASVDGIVTFLNASADNSSVDVVVAPPAPYLAYAKSKLKAGVLV 60

Query: 457 AAQNCWKSPKGAFTGEISPAMIKDVGVNWVILGHSERRTIFGEKDELVAEKVAHALESGL 636
           AAQNC+K PKGAFTGEISPAMIKD+G+ WVILGHSERR +FGE D L+AEK  HALE+G+
Sbjct: 61  AAQNCYKVPKGAFTGEISPAMIKDLGLEWVILGHSERRHVFGESDALIAEKTVHALEAGI 120

Query: 637 KVIACIGETLE 669
           KV+ CIGE LE
Sbjct: 121 KVVFCIGEKLE 131


>AL023828-10|CAA19447.1|  247|Caenorhabditis elegans Hypothetical
           protein Y17G7B.7 protein.
          Length = 247

 Score =  175 bits (426), Expect = 2e-44
 Identities = 82/131 (62%), Positives = 99/131 (75%)
 Frame = +1

Query: 277 MGRKFVVGGNWKMNGDKNQINEIVNNLKKGPLDPNVEVIVGVPAIYLSYVKTIIPDNVEV 456
           M RKF VGGNWKMNGD   ++ IV  L     + +V+V+V  PA YL+Y K+ +   V V
Sbjct: 1   MTRKFFVGGNWKMNGDYASVDGIVTFLNASADNSSVDVVVAPPAPYLAYAKSKLKAGVLV 60

Query: 457 AAQNCWKSPKGAFTGEISPAMIKDVGVNWVILGHSERRTIFGEKDELVAEKVAHALESGL 636
           AAQNC+K PKGAFTGEISPAMIKD+G+ WVILGHSERR +FGE D L+AEK  HALE+G+
Sbjct: 61  AAQNCYKVPKGAFTGEISPAMIKDLGLEWVILGHSERRHVFGESDALIAEKTVHALEAGI 120

Query: 637 KVIACIGETLE 669
           KV+ CIGE LE
Sbjct: 121 KVVFCIGEKLE 131


>U61944-2|AAL56621.1|  705|Caenorhabditis elegans Dynamin related
           protein protein1, isoform a protein.
          Length = 705

 Score = 31.9 bits (69), Expect = 0.42
 Identities = 15/42 (35%), Positives = 26/42 (61%)
 Frame = +1

Query: 328 NQINEIVNNLKKGPLDPNVEVIVGVPAIYLSYVKTIIPDNVE 453
           ++INE+V+ + K  L P  E++  + AI L+Y+ T  P+  E
Sbjct: 464 DKINEVVSGVLKERLKPTNELVENLVAIELAYINTKHPEFTE 505


>U61944-1|AAL56622.1|  712|Caenorhabditis elegans Dynamin related
           protein protein1, isoform b protein.
          Length = 712

 Score = 31.9 bits (69), Expect = 0.42
 Identities = 15/42 (35%), Positives = 26/42 (61%)
 Frame = +1

Query: 328 NQINEIVNNLKKGPLDPNVEVIVGVPAIYLSYVKTIIPDNVE 453
           ++INE+V+ + K  L P  E++  + AI L+Y+ T  P+  E
Sbjct: 464 DKINEVVSGVLKERLKPTNELVENLVAIELAYINTKHPEFTE 505


>AF166274-1|AAD49861.1|  705|Caenorhabditis elegans dynamin-related
           protein protein.
          Length = 705

 Score = 31.9 bits (69), Expect = 0.42
 Identities = 15/42 (35%), Positives = 26/42 (61%)
 Frame = +1

Query: 328 NQINEIVNNLKKGPLDPNVEVIVGVPAIYLSYVKTIIPDNVE 453
           ++INE+V+ + K  L P  E++  + AI L+Y+ T  P+  E
Sbjct: 464 DKINEVVSGVLKERLKPTNELVENLVAIELAYINTKHPEFTE 505


>U58760-4|AAK31462.2|  678|Caenorhabditis elegans Hypothetical
           protein C27A2.4 protein.
          Length = 678

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -2

Query: 552 KYNPIYSNVFDHSG*NFTSKSSFWRLPTVLGC 457
           K N ++S + +H+G    +  +FWR+P  L C
Sbjct: 171 KVNSLFSKLSEHTG-EVINADNFWRIPDTLRC 201


>AF077540-8|AAC26310.2|  683|Caenorhabditis elegans Btb and math
           domain containingprotein 47 protein.
          Length = 683

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = +1

Query: 319 GDKNQINEIVNNLKKGPLDPNVEVIVGVPAIYLSYVKTIIP 441
           GD N    I+++++       +EV+ G PAI+ + V+ I+P
Sbjct: 47  GDSNYQEHIISDVEPQDFQKFLEVVHGEPAIFEATVQKILP 87


>AF016418-2|AAK18901.1|  893|Caenorhabditis elegans Hypothetical
           protein C49G7.7 protein.
          Length = 893

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +1

Query: 307 WKMNGDKNQINEIVNNLKKGPLDPNVEVI 393
           W++NGD+  ++EI N+     LD +V VI
Sbjct: 83  WEINGDRETLSEIQNHNSYRDLDMDVLVI 111


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,026,161
Number of Sequences: 27780
Number of extensions: 291438
Number of successful extensions: 847
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 846
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)