Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11f09
         (670 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...   217   1e-58
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    24   1.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.5  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   6.1  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    21   8.0  

>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score =  217 bits (529), Expect = 1e-58
 Identities = 99/131 (75%), Positives = 113/131 (86%)
 Frame = +1

Query: 277 MGRKFVVGGNWKMNGDKNQINEIVNNLKKGPLDPNVEVIVGVPAIYLSYVKTIIPDNVEV 456
           MGRKF VGGNWKMNG K++IN+IV  LKKGPLD NVEV+VGVP+IYL+Y K I+P+N+ +
Sbjct: 1   MGRKFFVGGNWKMNGTKSEINDIVGFLKKGPLDSNVEVVVGVPSIYLTYAKNILPNNISI 60

Query: 457 AAQNCWKSPKGAFTGEISPAMIKDVGVNWVILGHSERRTIFGEKDELVAEKVAHALESGL 636
           A QN +K  KGAFTGEISPAM+ D G+ WVILGHSERR IFGE DEL+AEKVAHALESGL
Sbjct: 61  AGQNTYKVAKGAFTGEISPAMLLDNGIPWVILGHSERRNIFGENDELIAEKVAHALESGL 120

Query: 637 KVIACIGETLE 669
           KVIACIGE LE
Sbjct: 121 KVIACIGEKLE 131


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = +1

Query: 289 FVVGGNWKMNGDKNQINEIVNNLKKGP-LDPNVEVIVGVPAIYLSYVKTIIP 441
           F+  G W + G   + NEI  N    P +D    VI+    +Y  +   I+P
Sbjct: 191 FITNGEWDLLGVPGKRNEIYYNCCPEPYIDITFVVIIRRRTLYY-FFNLIVP 241


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 670 LRESHQYRQ*LSSQIQGHEQPFQQQ 596
           L+  H + Q  S+ +Q H +P+QQQ
Sbjct: 144 LQNHHHHLQ--STAVQDHHRPYQQQ 166


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 6/26 (23%), Positives = 15/26 (57%)
 Frame = +1

Query: 391 IVGVPAIYLSYVKTIIPDNVEVAAQN 468
           ++G P+  + Y   +IP+   ++ +N
Sbjct: 848 VIGTPSTGMMYKPFLIPEQTSISHEN 873


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 27  CLFYFKLHDKHSAY 68
           C+ Y+KL+  H AY
Sbjct: 70  CIGYYKLNKIHDAY 83


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,102
Number of Sequences: 438
Number of extensions: 3956
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)