Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11f09
         (670 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g21170.1 68415.m02511 triosephosphate isomerase, chloroplast,...   153   1e-37
At3g55440.1 68416.m06157 triosephosphate isomerase, cytosolic, p...   149   2e-36
At1g25220.1 68414.m03130 anthranilate synthase beta subunit (ASB...    30   1.2  
At5g41800.1 68418.m05089 amino acid transporter family protein s...    29   2.8  
At1g61670.1 68414.m06956 expressed protein similar to membrane p...    29   2.8  
At4g15380.1 68417.m02350 cytochrome P450 family protein similar ...    28   6.5  
At1g24807.1 68414.m03108 anthranilate synthase beta subunit, put...    28   6.5  
At5g57890.1 68418.m07242 anthranilate synthase beta subunit, put...    27   8.5  
At3g07430.1 68416.m00886 YGGT family protein contains Pfam profi...    27   8.5  

>At2g21170.1 68415.m02511 triosephosphate isomerase, chloroplast,
           putative similar to Triosephosphate isomerase,
           chloroplast precursor: SP|P48496 from Spinacia oleracea,
           SP|P46225 from Secale cereale
          Length = 315

 Score =  153 bits (370), Expect = 1e-37
 Identities = 71/157 (45%), Positives = 101/157 (64%), Gaps = 2/157 (1%)
 Frame = +1

Query: 205 KLNSTLQLIHDIC*KVGSSNKITEMGR--KFVVGGNWKMNGDKNQINEIVNNLKKGPLDP 378
           ++NS+ +L+        S   +  M    KF VGGNWK NG K+ I +++++L    L+ 
Sbjct: 36  RVNSSTRLVSSSSSSHRSPRGVVAMAGSGKFFVGGNWKCNGTKDSIAKLISDLNSATLEA 95

Query: 379 NVEVIVGVPAIYLSYVKTIIPDNVEVAAQNCWKSPKGAFTGEISPAMIKDVGVNWVILGH 558
           +V+V+V  P +Y+  VK+ + D ++++ QN W    GAFTGEIS   +KD+G  WVILGH
Sbjct: 96  DVDVVVSPPFVYIDQVKSSLTDRIDISGQNSWVGKGGAFTGEISVEQLKDLGCKWVILGH 155

Query: 559 SERRTIFGEKDELVAEKVAHALESGLKVIACIGETLE 669
           SERR + GEKDE + +K A+AL  GL VIACIGE LE
Sbjct: 156 SERRHVIGEKDEFIGKKAAYALSEGLGVIACIGEKLE 192


>At3g55440.1 68416.m06157 triosephosphate isomerase, cytosolic,
           putative strong similarity to triosephosphate isomerase,
           cytosolic from Petunia hybrida [SP|P48495], from Coptis
           japonica [SP|P21820]
          Length = 254

 Score =  149 bits (361), Expect = 2e-36
 Identities = 71/133 (53%), Positives = 89/133 (66%), Gaps = 2/133 (1%)
 Frame = +1

Query: 277 MGRKFVVGGNWKMNGDKNQINEIVNNLKKG--PLDPNVEVIVGVPAIYLSYVKTIIPDNV 450
           M RKF VGGNWK NG   ++ +IVN L +   P    VEV+V  P ++L  VK+ +  + 
Sbjct: 1   MARKFFVGGNWKCNGTAEEVKKIVNTLNEAQVPSQDVVEVVVSPPYVFLPLVKSTLRSDF 60

Query: 451 EVAAQNCWKSPKGAFTGEISPAMIKDVGVNWVILGHSERRTIFGEKDELVAEKVAHALES 630
            VAAQNCW    GAFTGE+S  M+ ++ + WVILGHSERR I  E  E V +KVA+AL  
Sbjct: 61  FVAAQNCWVKKGGAFTGEVSAEMLVNLDIPWVILGHSERRAILNESSEFVGDKVAYALAQ 120

Query: 631 GLKVIACIGETLE 669
           GLKVIAC+GETLE
Sbjct: 121 GLKVIACVGETLE 133


>At1g25220.1 68414.m03130 anthranilate synthase beta subunit (ASB1)
           identical to anthranilate synthase beta subunit
           GI:403434 from [Arabidopsis thaliana]
          Length = 276

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -2

Query: 465 LGCNFDIIRNDSLHIRQVNSRNTNNYL 385
           LGC+F++ RND L + ++  +N    L
Sbjct: 95  LGCHFEVYRNDELTVEELKKKNPRGVL 121


>At5g41800.1 68418.m05089 amino acid transporter family protein
           similar to amino acid permease 1 [Nicotiana sylvestris]
           GI:976402; belongs to INTERPRO:IPR002422 amino
           acid/polyamine transporter, family II
          Length = 452

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/28 (46%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = -3

Query: 278 ISVILFELPTFQQISCINC-SVLLSLSY 198
           + ++L +LP+F  +  INC S+LLSL Y
Sbjct: 162 VMMVLSQLPSFHSLRHINCASLLLSLGY 189


>At1g61670.1 68414.m06956 expressed protein similar to membrane
           protein PTM1 precursor isolog GI:1931644 from
           [Arabidopsis thaliana]
          Length = 513

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
 Frame = +1

Query: 388 VIVGVPAIYLSYVKTIIP--DNVEVAAQNCWKSPKGAFTGEISPAM 519
           V++    +Y  Y     P  D   +  +  WK+P G   G+++P M
Sbjct: 175 VVINKTGMYYLYFMICDPELDGTRIKGRTVWKNPDGYLPGKVAPLM 220


>At4g15380.1 68417.m02350 cytochrome P450 family protein similar to
           CYTOCHROME P450 93A3  (P450 CP5) (SP:O81973)  [Glycine
           max]
          Length = 517

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -3

Query: 539 FTPTS-LIIAGEISPVKAPFGDFQQF 465
           FTPT   + AG  S + AP+GD+ +F
Sbjct: 112 FTPTDDSLFAGSFSFISAPYGDYWKF 137


>At1g24807.1 68414.m03108 anthranilate synthase beta subunit,
           putative similar to anthranilate synthase beta chain
           GI:403434; similar to ESTs dbj|AV540153.1,
           dbj|AV557490.1, gb|AI997696.1, gb|AW004516.1,
           dbj|AV521371.1
          Length = 235

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = -2

Query: 507 NFTSKSSFWRLPTVLGCNFDIIRNDSLHIRQVNSRNTNNYL 385
           NF +   F +    L C+F++ RND L + ++  +N    L
Sbjct: 40  NFENCYLFLQYMGELQCHFEVYRNDELTVEELKRKNPRGVL 80


>At5g57890.1 68418.m07242 anthranilate synthase beta subunit,
           putative strong similarity to anthranilate synthase beta
           chain GI:403434 [Arabidopsis thaliana]
          Length = 273

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -2

Query: 465 LGCNFDIIRNDSLHIRQVNSRNTNNYL 385
           LGC+F++ RND L + ++  +     L
Sbjct: 92  LGCHFEVYRNDELTVEELKRKKPRGLL 118


>At3g07430.1 68416.m00886 YGGT family protein contains Pfam profile
           PF02325: YGGT family (unknown function)
          Length = 232

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -3

Query: 554 PSITQFTPTSLIIAGEISPVKAPFGDFQQFWAATSTLSG 438
           PS++   P S+ I+   SP+  P    ++  A +STL+G
Sbjct: 44  PSLSIQNPKSIRISASASPITTPILQTEKSTARSSTLTG 82


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,953,642
Number of Sequences: 28952
Number of extensions: 258492
Number of successful extensions: 668
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 667
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)