Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte11f07
(707 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces p... 25 0.20
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 30 0.37
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar... 30 0.37
SPAC23C11.01 |||ER membrane protein, ICE2 family|Schizosaccharom... 29 0.86
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 28 1.5
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 26 4.6
SPCC61.04c |||Rab GTPase binding|Schizosaccharomyces pombe|chr 3... 26 6.1
SPAC4F10.06 |||BUD22 family protein|Schizosaccharomyces pombe|ch... 26 6.1
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 25 8.0
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 25 8.0
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 25 8.0
SPAC25B8.10 |||trans-aconitate 3-methyltransferase |Schizosaccha... 25 8.0
>SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 752
Score = 25.4 bits (53), Expect(2) = 0.20
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +3
Query: 462 NATTITRKALKPTAVGEEKKYNKDL 536
N+TT T K L VGEE+K N+ L
Sbjct: 422 NSTTTTEKELSSLHVGEERK-NRSL 445
Score = 23.8 bits (49), Expect(2) = 0.20
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +3
Query: 339 KQFLDRRRLHELQMQVIIDAKNKKHNHYSVQEENDSKKPIRNATTI 476
++FLD LH+L I D+ N H SV + S++ + +I
Sbjct: 358 QKFLDEFYLHDLPESNIHDSGNFHPIHSSVDNNSFSQRDFDSPNSI 403
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 29.9 bits (64), Expect = 0.37
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +3
Query: 306 KLDKLEKKHNQKQFLDRRRLHELQMQVIIDAKNKKHNHYSVQEENDSKK 452
K DKL +HN+K L +R+L EL + + D + K +++ KK
Sbjct: 219 KADKLITRHNRKLKLKKRKLKELGITLESDVSHPKAASPVASKKSSKKK 267
>SPBC28E12.03 |rga4||GTPase activating protein
Rga4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 933
Score = 29.9 bits (64), Expect = 0.37
Identities = 33/129 (25%), Positives = 57/129 (44%), Gaps = 6/129 (4%)
Frame = +3
Query: 165 RYVIQSELSLMKCSLHSLKDTINNIGNAYDNLQKEINAILKTEYIGTKLDKLEKKHNQKQ 344
R Q ELS + +L T++ + NAY + +E T Y+ K +L +NQ
Sbjct: 536 RKSFQPELSTLLLRRDALSTTVSKLQNAYSTVMEE------TAYLNVKNTELVSLNNQ-- 587
Query: 345 FLDRRRLHELQMQVIIDAKNKKHNHYSVQEENDSKKPIRNATT------ITRKALKPTAV 506
L+R ++ + + ++KK S N+ KK R +T +R + +++
Sbjct: 588 -LER------ELAYLREQQHKKRTSSSFGIFNNDKKSNRTISTPSPRESFSRLQMVASSL 640
Query: 507 GEEKKYNKD 533
G K NKD
Sbjct: 641 GFRPKDNKD 649
>SPAC23C11.01 |||ER membrane protein, ICE2
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 441
Score = 28.7 bits (61), Expect = 0.86
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 7/73 (9%)
Frame = -2
Query: 571 VLSNLSSHFNTRRSLLYFFSS-----PTA--VGFSALRVIVVAFLIGFLLSFSSCTE*WL 413
+L N SS + LLY SS P A +GFS VIV++ + G ++ +E L
Sbjct: 196 ILLNASSAISMSLYLLYRVSSFSISNPNALMIGFSLATVIVIS-IYGVASGRANLSEASL 254
Query: 412 CFLFLASIITCIC 374
FL++A + +C
Sbjct: 255 MFLYIAYTVYMVC 267
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 27.9 bits (59), Expect = 1.5
Identities = 18/84 (21%), Positives = 43/84 (51%)
Frame = +3
Query: 309 LDKLEKKHNQKQFLDRRRLHELQMQVIIDAKNKKHNHYSVQEENDSKKPIRNATTITRKA 488
L+++E+++ +KQ + +++ E + + KK + +EE ++ R A +KA
Sbjct: 573 LEEIEEENKRKQERELKKIREKEKK----RDKKKQLKLAKEEERQRREAERLAEQAAQKA 628
Query: 489 LKPTAVGEEKKYNKDLRVLKCDDK 560
L+ E +K ++ R+ + +K
Sbjct: 629 LEAKRQEEARKKREEQRLKREQEK 652
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 26.2 bits (55), Expect = 4.6
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +3
Query: 453 PIRNATTITRKALK-PTAVGEEKKYNKDLRVLKCDDKFDKTQQCNDDPTMGQSR 611
P ++T T + + P+A + ++ +K RV K DD F + N D S+
Sbjct: 277 PAASSTMATESSHQSPSADSQAEELSKSQRVAKDDDPFVVSNTANSDEPASSSK 330
>SPCC61.04c |||Rab GTPase binding|Schizosaccharomyces pombe|chr
3|||Manual
Length = 227
Score = 25.8 bits (54), Expect = 6.1
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Frame = -2
Query: 571 VLSNLSSHFNTR---RSLLYFFSSPTAVGFSALRVIVVAF 461
+L +LS HF R L+F + + +G+S L ++V+AF
Sbjct: 125 LLGSLSLHFVLRLMSAKNLFFTRTVSVLGYSLLPLVVIAF 164
>SPAC4F10.06 |||BUD22 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 388
Score = 25.8 bits (54), Expect = 6.1
Identities = 24/110 (21%), Positives = 45/110 (40%), Gaps = 3/110 (2%)
Frame = +3
Query: 171 VIQSELSLMKCSLHSLKDTINNIGNAYDNLQKEINAILKTEYIG---TKLDKLEKKHNQK 341
+++ L + L L D A + QK I I K + + D+++ H Q
Sbjct: 142 ILEKYLRFLNPDLQELSDK-----KAVSSTQKPIKTIGKVDLSNKSTSNQDQVDNTHVQN 196
Query: 342 QFLDRRRLHELQMQVIIDAKNKKHNHYSVQEENDSKKPIRNATTITRKAL 491
+ + + D + K YS++ E + ++NAT I RK++
Sbjct: 197 STDGVNQDTGMILDNTEDKEINKSMSYSMKNEGVKESSLQNATLINRKSI 246
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 25.4 bits (53), Expect = 8.0
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 7/60 (11%)
Frame = -3
Query: 375 VIRVASFDPRIVSGYV----SSPIYLILYQ--CILFLELRLFLSVDC-RTHSRYYLLYLS 217
VI + D ++ G+V S I LY+ C L+L L++FLS+ R+ Y LL L+
Sbjct: 1045 VIFLKKCDKTLIEGFVLPILSIKIEKSLYKGFCYLYLTLKVFLSISSNRSALLYQLLKLA 1104
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 25.4 bits (53), Expect = 8.0
Identities = 23/100 (23%), Positives = 45/100 (45%)
Frame = +3
Query: 183 ELSLMKCSLHSLKDTINNIGNAYDNLQKEINAILKTEYIGTKLDKLEKKHNQKQFLDRRR 362
+L++ K + H D ++ + + + L+K K E +K K KH++KQ +D +
Sbjct: 81 QLNVSKNNGHKASDIVDAVSSKDEELRKHA----KGEGKRSKNRKRSSKHSEKQAVDLKS 136
Query: 363 LHELQMQVIIDAKNKKHNHYSVQEENDSKKPIRNATTITR 482
+ Q +K +N E S+ P +N+ I +
Sbjct: 137 SN--SSQETSSSKGSVNNKSERSREAKSRMP-KNSKEIKK 173
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 25.4 bits (53), Expect = 8.0
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +3
Query: 246 AYDNLQKEINAILKTEYIGTKLDKLEKK 329
AY+ LQKE IL TE + T+ +L K
Sbjct: 1703 AYERLQKENPNILTTEEVVTETGELRHK 1730
>SPAC25B8.10 |||trans-aconitate 3-methyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 256
Score = 25.4 bits (53), Expect = 8.0
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -3
Query: 357 FDPRIVSGYVSSPIYLILYQCILFLELRLFLSVDCRTHS 241
F PRI++ + I + +Y +L + + F +VDCR S
Sbjct: 54 FTPRIIASHPKEIIAVDVYPEMLDVLRKKFPNVDCRAGS 92
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,786,459
Number of Sequences: 5004
Number of extensions: 57274
Number of successful extensions: 206
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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