Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte11f07
(707 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_35419| Best HMM Match : SMC_C (HMM E-Value=1.9e-05) 34 0.13
SB_51562| Best HMM Match : HARP (HMM E-Value=0.00049) 33 0.17
SB_22350| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.92
SB_3226| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.021) 31 1.2
SB_24697| Best HMM Match : Filament (HMM E-Value=0.11) 30 1.6
SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0) 30 1.6
SB_870| Best HMM Match : 7tm_1 (HMM E-Value=5.3e-09) 30 1.6
SB_32651| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19) 30 2.1
SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_42| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45) 29 3.7
SB_8378| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_45697| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_31911| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_14243| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_19530| Best HMM Match : EMI (HMM E-Value=3.5) 28 8.5
SB_18301| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
SB_41563| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054) 28 8.5
SB_13180| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
>SB_35419| Best HMM Match : SMC_C (HMM E-Value=1.9e-05)
Length = 867
Score = 33.9 bits (74), Expect = 0.13
Identities = 28/105 (26%), Positives = 53/105 (50%), Gaps = 4/105 (3%)
Frame = +3
Query: 213 SLKDTINNIGNAYDNLQKEINAILKTEYIGTKLDKLEKKHNQKQ-FLDR--RRLHELQMQ 383
+L++ + NI L KE L+ E+ K +K +K+ +KQ F ++ ++ E ++
Sbjct: 522 TLEEEVVNITQQIAEL-KEQKTKLEEEFEAIK-EKHQKQELKKQRFKEKMEKKQEETMVE 579
Query: 384 VIIDAKNKKHNHYSVQEENDS-KKPIRNATTITRKALKPTAVGEE 515
++ N+KH VQE D+ K ++ +TRK TA+ +
Sbjct: 580 ILTAKNNRKHYSDKVQENKDAISKAEKSVVEMTRKIESTTAMAAQ 624
>SB_51562| Best HMM Match : HARP (HMM E-Value=0.00049)
Length = 508
Score = 33.5 bits (73), Expect = 0.17
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 12/91 (13%)
Frame = +3
Query: 264 KEINAILKTEYIGTKLDKLEKK---HNQKQFLDRRRLHELQMQVII---------DAKNK 407
KEIN + + G L + +++ N+K+ L+RR L Q Q A +K
Sbjct: 133 KEINEVCEMSSSGVGLSEEQRRKIEENRKKALERRALLNSQRQAPSVKGVSKPSGSAVDK 192
Query: 408 KHNHYSVQEENDSKKPIRNATTITRKALKPT 500
++NH + S KPI A T +R+A + T
Sbjct: 193 QNNHAVISRSFPSSKPINTAQTWSRQAHQTT 223
>SB_22350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1967
Score = 31.1 bits (67), Expect = 0.92
Identities = 27/116 (23%), Positives = 49/116 (42%), Gaps = 1/116 (0%)
Frame = +3
Query: 186 LSLMKCSLHSLKDTINNIGNAYDNLQKEINAI-LKTEYIGTKLDKLEKKHNQKQFLDRRR 362
L +K SL ++ + + +QKE NA+ K E + K + L KH+ K+
Sbjct: 1293 LEKIKASLKEAEERFQELNRTLEEVQKEKNALESKIEELTQKSETLMGKHSDKE------ 1346
Query: 363 LHELQMQVIIDAKNKKHNHYSVQEENDSKKPIRNATTITRKALKPTAVGEEKKYNK 530
EL+ K S+ EE KK ++ +T K + + ++K ++
Sbjct: 1347 -KELEKATTESVKFSHEKDASIDEEITFKK-VKPLEVVTIKPTRSSNGARQRKRSR 1400
>SB_3226| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.021)
Length = 1217
Score = 30.7 bits (66), Expect = 1.2
Identities = 21/89 (23%), Positives = 44/89 (49%)
Frame = +3
Query: 312 DKLEKKHNQKQFLDRRRLHELQMQVIIDAKNKKHNHYSVQEENDSKKPIRNATTITRKAL 491
+K++K+ + Q +++RL E + Q I + ++ ++ D ++ TT+ KAL
Sbjct: 542 EKIKKQKVENQEAEQKRLDEERRQREIQRRRQELQDIEKRQAMDKIAALKK-TTVGAKAL 600
Query: 492 KPTAVGEEKKYNKDLRVLKCDDKFDKTQQ 578
K + E N D + K ++ DK ++
Sbjct: 601 KDLSPEEIDNMNADDIIAKQVEQLDKEKR 629
>SB_24697| Best HMM Match : Filament (HMM E-Value=0.11)
Length = 266
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/61 (27%), Positives = 33/61 (54%)
Frame = +3
Query: 195 MKCSLHSLKDTINNIGNAYDNLQKEINAILKTEYIGTKLDKLEKKHNQKQFLDRRRLHEL 374
++ +HSL+ +N++ + D QKE A+ ++E L++ KH R+++ EL
Sbjct: 186 LQAQVHSLQQKLNSLEDELDRSQKE-RALYESE--ANDLNQTSMKHRDDATSTRKQVMEL 242
Query: 375 Q 377
Q
Sbjct: 243 Q 243
>SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)
Length = 2858
Score = 30.3 bits (65), Expect = 1.6
Identities = 28/134 (20%), Positives = 61/134 (45%), Gaps = 4/134 (2%)
Frame = +3
Query: 195 MKCSLHSLKDTINNIGNAYDNLQKEINAILKTE---YIGTKLDKLEKKHNQKQFLDRRRL 365
++ L + + + +N+ +DNLQK + A L+ E Y T++D + L R
Sbjct: 2458 LQAELEAARQSKDNLQEDFDNLQKRL-AQLEAEQEIYSKTRMDYEDSASTPPLLLLIRGA 2516
Query: 366 HELQMQVIIDAKNKKHNHYSVQEENDSKKPIRNATTITRKALKPTAVG-EEKKYNKDLRV 542
LQ +++ K H Y ++ + + + IT K ++ V E+ + R+
Sbjct: 2517 RNLQQELLGAHKMISHMDYELRTVREKYETL----IITYKTVEVRIVTLREEVVSYQKRI 2572
Query: 543 LKCDDKFDKTQQCN 584
+ ++K++ ++ N
Sbjct: 2573 SELEEKYEHARELN 2586
Score = 27.9 bits (59), Expect = 8.5
Identities = 20/94 (21%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Frame = +3
Query: 174 IQSELSLMKCSLHSLKDTINNIGNAYDNLQKEI-NAILKTEYIGTKLDKLEKKHNQKQFL 350
+Q ++ +K + L D I++ N Y+ LQK N L+ + K+ ++K + +
Sbjct: 2374 MQEDVDALKAEKNRLNDDISSWQNKYNTLQKNYDNLDLEKHKLEDKIASMQKTIDHLENA 2433
Query: 351 DRRRLHELQMQVIIDAKNKKHNHYSVQEENDSKK 452
+ + L + ++ D +N K ++ +Q E ++ +
Sbjct: 2434 N-QGLTTDKGKLYHDFENAKRKNHDLQAELEAAR 2466
>SB_870| Best HMM Match : 7tm_1 (HMM E-Value=5.3e-09)
Length = 334
Score = 30.3 bits (65), Expect = 1.6
Identities = 26/111 (23%), Positives = 47/111 (42%)
Frame = -2
Query: 589 SSLHC*VLSNLSSHFNTRRSLLYFFSSPTAVGFSALRVIVVAFLIGFLLSFSSCTE*WLC 410
+SLH L+ L+ +F RS+ Y F+AL +I+V +I +L+ W
Sbjct: 112 ASLHIMALTALNRYFRVVRSVSY--KKRFTRRFAALSIIIV-LIIAVILALLPTVLRWSE 168
Query: 409 FLFLASIITCICNSCSLLRSKNCFWLCFFSNLSNFVPMYSVFRIAFISFCR 257
F F ++C L + + F + +PM ++ ++ S R
Sbjct: 169 FTFRPDKVSCFITFYPGLPTIKSSYTSFLLLVYTVIPMVTISSLSIPSTSR 219
>SB_32651| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 725
Score = 29.9 bits (64), Expect = 2.1
Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 3/102 (2%)
Frame = +3
Query: 282 LKTEYIGTKLDKLEKKHNQKQFLDRRRLHELQ--MQVIIDAKNKKHNHYSVQEENDSK-K 452
L +Y +++DKLE K K +RR E + + +D N K N +E + K +
Sbjct: 163 LDGKYSSSQIDKLETKQAIKSKKKKRRKSEEKELLGEKVDQFNSKKNLNRTKERHSKKME 222
Query: 453 PIRNATTITRKALKPTAVGEEKKYNKDLRVLKCDDKFDKTQQ 578
R + TR K + D +++ D K+ +T++
Sbjct: 223 KNRQDNSKTRSQQKCKSDDFSPSTKPDSTIIRKDSKYPRTKK 264
>SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19)
Length = 3107
Score = 29.9 bits (64), Expect = 2.1
Identities = 31/132 (23%), Positives = 58/132 (43%), Gaps = 4/132 (3%)
Frame = +3
Query: 162 ERYVIQSELSLMKCSLHSLKDTINNIGNAYDNLQKEI-NAILKTEYIGTKLDKLEKKHNQ 338
++ ++ ELS L++ N+ D L+KE+ + LK + + LDK +K ++
Sbjct: 642 QKDALERELSEANGKNRELEEACENLAGIRDELEKELAGSKLKIQSLENSLDKANEKTSE 701
Query: 339 KQFLD---RRRLHELQMQVIIDAKNKKHNHYSVQEENDSKKPIRNATTITRKALKPTAVG 509
+ + R+ + EL+ + A KH VQ EN A+ + + V
Sbjct: 702 AEHNNGRLRKTISELENNLY--ALRNKH----VQMENQFNHTFDEASDLHSQL--DNTVA 753
Query: 510 EEKKYNKDLRVL 545
+ KY +L +L
Sbjct: 754 DCIKYEHELNML 765
Score = 28.3 bits (60), Expect = 6.5
Identities = 21/92 (22%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Frame = +3
Query: 174 IQSELSLMKCSLHSLKDTINNIGNAYDNLQKEIN-AILKTEYIGTKLDKLEKK--HNQKQ 344
++ EL + + LKD+ N ++L KE+N A K + L+K++K NQ Q
Sbjct: 1753 LEKELYSAQQEIQPLKDSFNTAVAENESLVKELNEANNKNIKLELTLEKMQKSQAQNQYQ 1812
Query: 345 FLDRRRLHELQMQVIIDAKNKKHNHYSVQEEN 440
D + + ++ + K + ++ E++
Sbjct: 1813 VEDALSKYSRSEEELMQTRRKLQEYQTLWEQH 1844
>SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6863
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/53 (26%), Positives = 24/53 (45%)
Frame = -2
Query: 415 LCFLFLASIITCICNSCSLLRSKNCFWLCFFSNLSNFVPMYSVFRIAFISFCR 257
+C L + IC C+L+R C+ +C NL Y++ I ++ R
Sbjct: 5850 MCNLVRRDMCYPICGMCNLVRRDMCYKICGMCNLVRRDMCYTICGICYLHLGR 5902
>SB_42| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1207
Score = 29.1 bits (62), Expect = 3.7
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 519 KYNKDLRVLKCDDKFDKTQQCNDDPT 596
K D+ LKC DKF+ +C+ D T
Sbjct: 819 KCKSDVGELKCPDKFENATKCSSDST 844
>SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45)
Length = 4160
Score = 29.1 bits (62), Expect = 3.7
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 6/55 (10%)
Frame = +3
Query: 198 KCSLHSLKDTINNIGNAYDNLQKEINAILK------TEYIGTKLDKLEKKHNQKQ 344
K LH L+ I N+ D+L+KE+ ++ + T Y+ K +LEK ++ KQ
Sbjct: 3856 KTQLHDLETEIRNLKLKIDSLEKEVESLQEDLVLSHTAYLDAK-KQLEKDNSSKQ 3909
>SB_8378| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 239
Score = 28.7 bits (61), Expect = 4.9
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +3
Query: 396 AKNKKHNHYSVQEENDSKKPI 458
AK +KHNHYS+ + + P+
Sbjct: 65 AKTRKHNHYSISQHGHNHGPV 85
>SB_45697| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 734
Score = 28.7 bits (61), Expect = 4.9
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 10/88 (11%)
Frame = +3
Query: 177 QSELSLMKCSLHSLKDTINNIGNAYDNLQKEINAILK---TEYIGTKLDKLEKKH-NQKQ 344
Q EL +K L + ++ DN KE+ + K T TK++ L+ H NQ
Sbjct: 463 QEELVKLKAELDDANEKNRSLQTTLDNAYKELTELHKDKATRESTTKIENLQSTHSNQAS 522
Query: 345 FLDR------RRLHELQMQVIIDAKNKK 410
++ RL+E Q Q +++A+ K+
Sbjct: 523 SWEKVERNLTERLNEFQSQ-LLEAQEKE 549
>SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 749
Score = 28.3 bits (60), Expect = 6.5
Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = +3
Query: 219 KDTINNIGNAYDNLQKEINAILKTE-YIGTKLDKLEKKHNQKQFLDRRRLHELQMQVIID 395
K + + N Y K A K YIG D+ K N+K + + R H++++ +++
Sbjct: 600 KRKVQSAINRYKQFMKIYPANHKDPFYIGVMCDRCSYKGNRKSYQENR--HDMELPLLLP 657
Query: 396 AKNKKH 413
++ H
Sbjct: 658 PRSSSH 663
>SB_31911| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1312
Score = 28.3 bits (60), Expect = 6.5
Identities = 10/33 (30%), Positives = 21/33 (63%)
Frame = -1
Query: 629 ILIRLKSGLSHCRIIITLLSFIKFVIAF*YPKV 531
+++ +KS LS+C + +SF+K + F +P +
Sbjct: 239 LILLIKSSLSNCFMYTLSISFLKIIYTFLFPGI 271
>SB_14243| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1507
Score = 28.3 bits (60), Expect = 6.5
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +3
Query: 321 EKKHNQKQFLDRRRLHELQMQVIIDAKNKKHNHYSVQEENDSKKPIRN 464
EK+ +K++ D E ++ I KK N Q+END+KK I N
Sbjct: 683 EKEKERKKWKDELTAREKEITEI-----KKMNETLTQQENDNKKKINN 725
>SB_19530| Best HMM Match : EMI (HMM E-Value=3.5)
Length = 244
Score = 27.9 bits (59), Expect = 8.5
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +3
Query: 177 QSELSLMKCSLHSLKDTINNIGNAYDNLQKEINAILKTEYIGTKLDK 317
Q EL++ KC L ++ N I + Y K I++++ Y+G ++ K
Sbjct: 14 QMELNIDKCKLLTVTKKKNPIISTYHMGGKLIDSVVSHPYLGVEISK 60
>SB_18301| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 92
Score = 27.9 bits (59), Expect = 8.5
Identities = 17/58 (29%), Positives = 31/58 (53%)
Frame = +3
Query: 366 HELQMQVIIDAKNKKHNHYSVQEENDSKKPIRNATTITRKALKPTAVGEEKKYNKDLR 539
H+ M+ ++ A + ++Y ++ + D +RN +T P+ +GEEK YN LR
Sbjct: 2 HDYAMKNLMFALTIEPSNYHLRAKMDWVVEMRNNKYMT----SPSTIGEEKLYNPFLR 55
>SB_41563| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 142
Score = 27.9 bits (59), Expect = 8.5
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +3
Query: 177 QSELSLMKCSLHSLKDTINNIGNAYDNLQKEINAILKTEYIGTKLDK 317
Q EL++ KC L + + N I + Y K I++++ Y+G ++ K
Sbjct: 46 QMELNIDKCELLTDTEKKNPIISTYHTGGKLIDSVVSHPYLGVEMSK 92
>SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054)
Length = 1079
Score = 27.9 bits (59), Expect = 8.5
Identities = 16/65 (24%), Positives = 29/65 (44%)
Frame = +3
Query: 393 DAKNKKHNHYSVQEENDSKKPIRNATTITRKALKPTAVGEEKKYNKDLRVLKCDDKFDKT 572
+ K +H+H+ + + RN T K LK + + +K N D L ++ +K
Sbjct: 641 EIKKHRHHHHHHHHRSKKDRRHRNTKTHHAKHLKGHSARKHRKENNDAETL--EEAVEKD 698
Query: 573 QQCND 587
+ ND
Sbjct: 699 ARKND 703
>SB_13180| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 217
Score = 27.9 bits (59), Expect = 8.5
Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Frame = -2
Query: 409 FLFLASIITCICNSCSLLRSKNCFWLCFFSNLSNFVPMYSVFR---IAFISFCRLSYAFP 239
F+F+ +I+ C+C+ S+++S +L L + + V F F R + F
Sbjct: 147 FVFIETIMGCLCDQFSVIKSYKKTFLAILCTLCYLIGLCCVTEGGIYMFNIFDRQAGGFS 206
Query: 238 ILFIVSF 218
++FI F
Sbjct: 207 LIFISIF 213
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,673,204
Number of Sequences: 59808
Number of extensions: 387299
Number of successful extensions: 1147
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1044
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1143
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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