Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11f05
         (696 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    27   1.9  
SPBC3H7.11 |||actin binding methyltransferase |Schizosaccharomyc...    27   3.4  
SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase |Schizosac...    27   3.4  
SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces pomb...    26   4.5  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    26   4.5  

>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 20/65 (30%), Positives = 33/65 (50%)
 Frame = -2

Query: 593 PSSTEIPHGSSVAVYLILHSISSVRGPRKPTVTSRNVSFNTAVFVSITRYDIFCLDWLAS 414
           P++  +  GS  AV  +   +++   PR  ++TS   S   AV  SI+ YD FC  +L+ 
Sbjct: 63  PTAPTVSTGSP-AVASLHDQVAAAISPRNRSLTS--TSAVEAVPASISAYDEFCSKYLSK 119

Query: 413 RLTTS 399
            +  S
Sbjct: 120 YMELS 124


>SPBC3H7.11 |||actin binding methyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 248

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
 Frame = +3

Query: 165 CEESPTCYPCLPHCPQSMVYCCDTRPKTP--LRRSSC 269
           C      YP L   P   +YCCD  P+    +++ SC
Sbjct: 64  CGVGNLVYPLLEVQPNLKIYCCDFSPRAIDFVKKHSC 100


>SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = +2

Query: 395 SNLLSAYLP--TSQDKICHTVLSIRRRPY*TIRSYSSR*ASWVRVQTKW 535
           SN +SA++    S+ K CHT L  R R   ++ S   R  S V   TKW
Sbjct: 16  SNAISAFISWRLSESKACHTTLIWRNRCE-SVLSEGIRIRSSVFGSTKW 63


>SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 394

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = -2

Query: 629 FNSSVDTATL*IPSSTEIPHGSSVAVYLILHSISSVRGPRKPTVTSRNVSF 477
           +  + D AT  IPS  +IP     AV   +   +  + PR  TV+   V+F
Sbjct: 11  YKGNGDLATTDIPSHEKIPSAKRTAVQFCI-GPTHEQSPRMSTVSQGRVTF 60


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
 Frame = +1

Query: 307  EIIAPLAKTETPHRPLVVRIQPTSPLQTAVQLVVSLLANQ-------SRQNMSYRVIDTK 465
            EI+   +K E   +P  V IQP  P+ T+    V+  AN+       S  N+  R +D  
Sbjct: 2205 EILENESKEEETRQP-EVNIQPEEPINTSDMEGVTTEANEIGSYQEPSLINIRGREVDVS 2263

Query: 466  TAVLNDTFLL 495
            +  ++ TFLL
Sbjct: 2264 SLGIDPTFLL 2273


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,703,590
Number of Sequences: 5004
Number of extensions: 53515
Number of successful extensions: 129
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)