Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11f05
         (696 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32980| Best HMM Match : DEAD (HMM E-Value=0)                        31   0.89 
SB_57729| Best HMM Match : PADR1 (HMM E-Value=0.52)                    30   2.1  
SB_16600| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_11973| Best HMM Match : Cupin_1 (HMM E-Value=3.4)                   29   4.8  
SB_41668| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  
SB_34159| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  

>SB_32980| Best HMM Match : DEAD (HMM E-Value=0)
          Length = 985

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +3

Query: 456 RYEDGRIERYVPTRHGRLPGSAYRRNGMQDQIHGYRGAVRY 578
           R  + R   Y P  HG+   + YR  G Q+  HG R  + Y
Sbjct: 803 RTNNNRSHSYGPPNHGKQYQNGYRGYGFQENNHGSRDQLNY 843


>SB_57729| Best HMM Match : PADR1 (HMM E-Value=0.52)
          Length = 105

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -3

Query: 217 IDCGQCGKHG*HVGDSSHLVGYEDVTRTGATANGPQ 110
           I+C +C  H   V +S HLVG    + T +T+   Q
Sbjct: 70  IECSKCNSHQQSVDESRHLVGPGSKSTTDSTSRSSQ 105


>SB_16600| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 171

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/56 (26%), Positives = 24/56 (42%)
 Frame = +3

Query: 480 RYVPTRHGRLPGSAYRRNGMQDQIHGYRGAVRYLCAGGNSQGCCVYTTIEPMRRLY 647
           RY+  +H +L    + R       H Y G + +L  GG++      T +E    LY
Sbjct: 18  RYIFGKHEQLCREGFVRTTRVIDCHNYTGNIEFLQPGGSTSSRAAATAVELQFALY 73


>SB_11973| Best HMM Match : Cupin_1 (HMM E-Value=3.4)
          Length = 394

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +3

Query: 519 AYRRNGMQDQIHGYRGA-VRYLCAGGNSQGCCVYTTIEPMRRLYPKVT 659
           +++ N    Q+H      V  + AG  SQG     TI PM+R+ P  T
Sbjct: 58  SHQPNPTTSQVHITMATPVSQMVAGATSQGVITQQTIAPMQRIAPAST 105


>SB_41668| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 588

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = +1

Query: 220 FTVVTLGRRHH*GGQVVVIARNLIAVIVTEIIAPLAKTE 336
           F++ ++ R HH  G ++ +A   + VIV+    P+ + E
Sbjct: 464 FSLFSMVRHHHFPGLIIYVASGAVMVIVSLFTKPVPREE 502


>SB_34159| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1234

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +1

Query: 283 NLIAVIVTEIIAPLAKTET-PHRPLVVRIQPTSPLQTAVQLVVSLLAN 423
           +++A+ +  +   L +T+  PH  L   +QP   L+T VQL  +L  N
Sbjct: 790 SIVAICIIMVWTELHQTKAHPHNALGTNVQPRDALRTNVQLRNALGTN 837


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,537,804
Number of Sequences: 59808
Number of extensions: 426260
Number of successful extensions: 1093
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1026
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1093
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)