Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11f05
         (696 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g20960.1 68415.m02479 expressed protein pEARLI 4 gene product...    29   2.2  
At5g45970.1 68418.m05652 Rac-like GTP-binding protein (ARAC2) id...    28   5.1  
At1g32190.1 68414.m03959 expressed protein                             28   5.1  

>At2g20960.1 68415.m02479 expressed protein pEARLI 4 gene product
           [Arabidopsis thaliana] GI:871782
          Length = 748

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = +3

Query: 117 PFAVAPVLVTSSYPTRCEESPTCYPCLPHCPQSMVYCCDTRPKTPLRRSSCCDSK 281
           PF   P   T  +P R  +     P      Q   +  +TRP+TP RRS+  D++
Sbjct: 149 PFGTQPK--TPEHPLRTPQHRPRTPQHRSAHQEDAFSLETRPRTPERRSNTSDTR 201


>At5g45970.1 68418.m05652 Rac-like GTP-binding protein (ARAC2)
           identical to RAC-like GTP binding protein ARAC2
           SP:Q38903
          Length = 201

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = +3

Query: 510 PGSAYRRNGMQDQIHGYRGAVRYL-CAGGNSQGC-CVYTTIEPMRRLYPKVTQEINPVKK 683
           PG+A       +++    GAVRYL C+    Q    V+ T   +    PK  ++I P+K 
Sbjct: 133 PGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVFDTAIRVALRPPKAKKKIKPLKT 192

Query: 684 EK 689
           ++
Sbjct: 193 KR 194


>At1g32190.1 68414.m03959 expressed protein
          Length = 422

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
 Frame = +3

Query: 183 CYPCL--PHCPQSMVYCCDTRPKTPLRRSSCCDS 278
           C  C   P CP+   + C   P T   RSSCC S
Sbjct: 359 CSSCFGKPKCPKCSCWKCLKCPDTECCRSSCCCS 392


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,053,518
Number of Sequences: 28952
Number of extensions: 279047
Number of successful extensions: 707
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)