Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11f04
         (690 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch...    26   4.5  
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    26   5.9  
SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein Vps33|S...    26   5.9  
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce...    25   7.8  

>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 764

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/38 (31%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = -2

Query: 173 SSLHS*FVFIEFMNIDTQLELIFSYF-NIRP*ISCLRN 63
           ++LH+ ++F  F++ DT  +LI + + N  P ++ L N
Sbjct: 276 TTLHARYIFASFISRDTTYQLIIAIWKNTHPFLTTLAN 313


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1717

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 194  REAREKDENWLRHEKVYKKIQITSGLQSEE 283
            RE RE  E W    + YKK Q T+  ++++
Sbjct: 1119 REWRENSEEWKEKMREYKKWQSTANQRAKQ 1148


>SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein
           Vps33|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 592

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
 Frame = -2

Query: 596 TYVQHNNVHYFVKLVKN*ILVAVH----ILFNFIKKILYAK 486
           T VQH   +YF KL++   L+  H      FN + +I+YA+
Sbjct: 343 TLVQHTKNNYFQKLLQLQHLLVSHADSFTQFNLLDEIIYAE 383


>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/23 (43%), Positives = 18/23 (78%)
 Frame = +2

Query: 38  ITSIYKRNSSSNTKSKVEY*NRK 106
           +TS+++R+ SSNT +  +Y +RK
Sbjct: 109 VTSLHRRSLSSNTSTPRKYHSRK 131


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,358,445
Number of Sequences: 5004
Number of extensions: 44178
Number of successful extensions: 116
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)