Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11f04
         (690 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12)                   50   1e-06
SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26)                 42   6e-04
SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29)                 39   0.003
SB_58907| Best HMM Match : HSP20 (HMM E-Value=4.2e-05)                 36   0.023
SB_6186| Best HMM Match : HSP20 (HMM E-Value=1.1e-06)                  31   0.88 
SB_25969| Best HMM Match : fn3 (HMM E-Value=3.1e-13)                   29   2.7  
SB_10648| Best HMM Match : 7TM-7TMR_HD (HMM E-Value=3.4)               28   8.2  

>SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12)
          Length = 210

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 35/124 (28%), Positives = 63/124 (50%), Gaps = 4/124 (3%)
 Frame = +3

Query: 69  QTRN--LRSNIKIGKDKFQLS-VDVHKFNKDELRVKARPDCLVIEGKQERKTKTGYVMRR 239
           +TRN  L +N ++  DK +++ +DV  +  +E+ +K     + I+GK + + + GY    
Sbjct: 23  ETRNCSLAANTEMEGDKVEIATLDVKNYRPEEISLKVEHGRIKIDGKHKSEGEHGYETSE 82

Query: 240 FTRKFRLPPGCSPKKIESKLSPEGILTITAPRKNWETTTPCETLIP-IGYSDPQKNDKEK 416
           F R + LP G     + S+++ +G+L I A +       P ET +  +G S     D  K
Sbjct: 83  FHRSYNLPDGVDVSTVSSRITGDGLLHIEALK-----AEPQETEVSLVGASTGSAGDIAK 137

Query: 417 INIK 428
           I+ K
Sbjct: 138 IDDK 141


>SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26)
          Length = 185

 Score = 41.5 bits (93), Expect = 6e-04
 Identities = 23/76 (30%), Positives = 38/76 (50%)
 Frame = +3

Query: 111 KFQLSVDVHKFNKDELRVKARPDCLVIEGKQERKTKTGYVMRRFTRKFRLPPGCSPKKIE 290
           KF L++DV  F  +E+ VK     L +  +QE +    +  R+F R F LP       + 
Sbjct: 99  KFTLALDVSDFKPEEVDVKVYGHELSVRARQECEEHGFFTARQFNRHFVLPREVDMDTLV 158

Query: 291 SKLSPEGILTITAPRK 338
            +L  +G+L I A ++
Sbjct: 159 PRLGKDGVLYIEADKR 174


>SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29)
          Length = 189

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 23/93 (24%), Positives = 42/93 (45%)
 Frame = +3

Query: 96  KIGKDKFQLSVDVHKFNKDELRVKARPDCLVIEGKQERKTKTGYVMRRFTRKFRLPPGCS 275
           K  +DKF +++DV  F  + ++V+   + L++    E + +  Y    F R+F LP    
Sbjct: 92  KAKEDKFSMAIDVAGFPPESIKVQVLGNELLVNANHEVEHEGHYHAMHFNRQFVLPREVD 151

Query: 276 PKKIESKLSPEGILTITAPRKNWETTTPCETLI 374
              + ++L  EG L   A +       P   L+
Sbjct: 152 MDSLTTRLDKEGKLHFEAKKSVAPALPPVRELM 184


>SB_58907| Best HMM Match : HSP20 (HMM E-Value=4.2e-05)
          Length = 259

 Score = 36.3 bits (80), Expect = 0.023
 Identities = 21/66 (31%), Positives = 32/66 (48%)
 Frame = +3

Query: 66  PQTRNLRSNIKIGKDKFQLSVDVHKFNKDELRVKARPDCLVIEGKQERKTKTGYVMRRFT 245
           P T+  +S       KF L++DV  F  +E+ VK     L +  +QE +    +  R+F 
Sbjct: 12  PATKENQSAATKDDTKFTLALDVSDFKPEEVDVKVYGHELSVRARQECEEHGFFTARQFN 71

Query: 246 RKFRLP 263
           R F LP
Sbjct: 72  RHFVLP 77


>SB_6186| Best HMM Match : HSP20 (HMM E-Value=1.1e-06)
          Length = 237

 Score = 31.1 bits (67), Expect = 0.88
 Identities = 20/78 (25%), Positives = 38/78 (48%)
 Frame = +3

Query: 105 KDKFQLSVDVHKFNKDELRVKARPDCLVIEGKQERKTKTGYVMRRFTRKFRLPPGCSPKK 284
           K+  +L ++V  F   ++ ++     L+I+G++  K      MR+F  + R P     K 
Sbjct: 97  KNGIKLEMNVRGFAAKDVSLQVDGQDLIIKGEKMDKDDGWCKMRQFCWRRRFPKSTDMKS 156

Query: 285 IESKLSPEGILTITAPRK 338
           I++ L    IL I A ++
Sbjct: 157 IKATLKYGDILEIEAQKE 174


>SB_25969| Best HMM Match : fn3 (HMM E-Value=3.1e-13)
          Length = 469

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = -2

Query: 347 FPIFSRRCYRENAFRRQLRFNLLRTATRR*SEFSCKPSHDVASFRLSLLLPFNHQAV 177
           FP +  R  R +     ++FN +  A R  +  + K SH+ A  R   + P++H  V
Sbjct: 393 FPEYMERVSRISYTYLNVQFNKIMNARRSFTSHAAKLSHNRAKSRYGNIQPYDHSRV 449


>SB_10648| Best HMM Match : 7TM-7TMR_HD (HMM E-Value=3.4)
          Length = 272

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -1

Query: 546 LNFSCCSHII*FY*KNSIRKTKIISYCLCYL 454
           +++SC  HI+  Y     R + I+S C+C++
Sbjct: 232 ISWSCIRHIVVVYPSYRYRASVILSSCICHI 262


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,645,251
Number of Sequences: 59808
Number of extensions: 308506
Number of successful extensions: 990
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 988
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)