Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte11f02
(705 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr... 28 1.1
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|... 28 1.1
SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase Rdp1|Schizosa... 28 1.5
SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces po... 27 2.0
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 27 2.6
SPCC1494.03 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 27 3.5
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ... 26 4.6
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar... 26 4.6
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 26 4.6
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 26 6.0
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 25 8.0
>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 633
Score = 28.3 bits (60), Expect = 1.1
Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 3/99 (3%)
Frame = +3
Query: 207 EECVKEWEDLVADYKRLETINKEYTTKL-EEVGELQAACLKELEHQKYRMSIINAALKRL 383
EEC K W + YK +E N KL ++ ELQA+ +L+H +A L
Sbjct: 174 EECEKSWLEQQKLYKDMEQENASTIQKLTSKIRELQAS---QLDHDLQASQNESAGLDVN 230
Query: 384 EKKGGVKD--ERVTNLEKEIMKRKAMLHEIKATLPKQNS 494
K V + + K I++ +A + +K +Q S
Sbjct: 231 AKSAEVNAILSELDDANKIIVELQAEIAVLKQNTKEQKS 269
>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 664
Score = 28.3 bits (60), Expect = 1.1
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +3
Query: 189 HPKMEVEECVKEWEDLVADYKRLET 263
H K+E EE +K W L +D+ RLET
Sbjct: 641 HVKLE-EESLKIWHTLESDFSRLET 664
>SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase
Rdp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1215
Score = 27.9 bits (59), Expect = 1.5
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +3
Query: 234 LVADYK-RLETINKEYTTKLEEVGELQAACLKELEHQKYRMSIINAALKRLEKKGGVK 404
LV DYK R IN + EE+ L ACL + + + II A LK+L K+ K
Sbjct: 362 LVPDYKHRCSLINDKEIE--EEIAYLLQACLSKNLLSEIDLPIILANLKKLSKERAKK 417
>SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 449
Score = 27.5 bits (58), Expect = 2.0
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +3
Query: 198 MEVEECVKEWEDLVADYKRLETI 266
+E E KEW+DLVA+ +++E I
Sbjct: 387 LEDEAVEKEWQDLVAEEQKVEDI 409
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 27.1 bits (57), Expect = 2.6
Identities = 11/28 (39%), Positives = 21/28 (75%)
Frame = +2
Query: 416 HKPREGDNEEESDASRDKSHAPQTEQLI 499
++P+E EESDA+R+K + P+++ L+
Sbjct: 945 YRPKE--RAEESDAAREKFNVPESDHLM 970
>SPCC1494.03 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 492
Score = 26.6 bits (56), Expect = 3.5
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = -3
Query: 184 KCFHSSFFNIY*VIQSMIRLSTPFYILLLLSESPCSWY 71
K S F ++ + SMIRLS P YIL L++ P +Y
Sbjct: 331 KLASSRFTQLHYISASMIRLSMP-YILCELADHPERFY 367
>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1147
Score = 26.2 bits (55), Expect = 4.6
Identities = 15/65 (23%), Positives = 35/65 (53%)
Frame = +3
Query: 270 KEYTTKLEEVGELQAACLKELEHQKYRMSIINAALKRLEKKGGVKDERVTNLEKEIMKRK 449
K+ T +E+ ++ KEL ++ R + I+ L+ +E ++ VTNLE +++ +
Sbjct: 704 KDATASQKELIVQTSSFQKELVEERERHNAISKRLQEIESLYRDRELLVTNLEDQLVDQT 763
Query: 450 AMLHE 464
+++
Sbjct: 764 VTINK 768
>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1689
Score = 26.2 bits (55), Expect = 4.6
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +3
Query: 228 EDLVADYKRLETINKEYTTKLEEVGELQAACLKEL 332
++ V+D+K + + K+ T + E ELQ KE+
Sbjct: 1439 DESVSDFKERKLLEKQNTVSISERRELQLKTAKEI 1473
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 26.2 bits (55), Expect = 4.6
Identities = 13/65 (20%), Positives = 32/65 (49%)
Frame = +3
Query: 270 KEYTTKLEEVGELQAACLKELEHQKYRMSIINAALKRLEKKGGVKDERVTNLEKEIMKRK 449
+ Y TK++E+ E A+ + + +++ + + E + K+ + +KEI + +
Sbjct: 1021 RSYDTKVQELREENASLKDQCRTYESQLASLVSKYSETESELNKKEAELVIFQKEITEYR 1080
Query: 450 AMLHE 464
LH+
Sbjct: 1081 DQLHK 1085
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 25.8 bits (54), Expect = 6.0
Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Frame = +3
Query: 189 HPKMEVEECVK-EWEDLVADYKRLETINKEYTTKLEEVGELQAACLKELEHQKYRMSIIN 365
H ++ C++ + E+L + + E EE E Q ++ LE Q IIN
Sbjct: 226 HESLKRISCIRSKVEELDQEITETARLQDELFKSTEEY-EQQMITIRHLESQS---DIIN 281
Query: 366 AALKRLEKKGGVKDERVTNLEK 431
+ L+ + + DE +LEK
Sbjct: 282 TTINDLKSQMTITDESSEDLEK 303
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 25.4 bits (53), Expect = 8.0
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Frame = +3
Query: 249 KRLETINKEY--TTKLEEVGELQAACLKELEHQKYRMSIINAALKRLEKKGGVKDERVTN 422
K + +NK Y T+++E L E + + N LK L+KK K+E + N
Sbjct: 61 KAIRYLNKSYVETSRIEVHRALDYRSANEKLRPYSKYASKNIELK-LQKKE--KEEELRN 117
Query: 423 LEKEIMKRK 449
LE+E K+K
Sbjct: 118 LEEEKAKKK 126
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,541,457
Number of Sequences: 5004
Number of extensions: 45392
Number of successful extensions: 127
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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