Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11f01
         (727 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81475-6|CAB03913.2|  132|Caenorhabditis elegans Hypothetical pr...   101   4e-22
AC024826-5|AAF60800.1|  152|Caenorhabditis elegans Hypothetical ...    69   3e-12
AC199169-1|ABO33259.1|  450|Caenorhabditis elegans Hypothetical ...    31   0.63 
U00058-6|AAA50729.2|  189|Caenorhabditis elegans Hypothetical pr...    28   7.8  
AF077542-11|AAC26296.1|  137|Caenorhabditis elegans Hypothetical...    28   7.8  

>Z81475-6|CAB03913.2|  132|Caenorhabditis elegans Hypothetical
           protein C24H11.6 protein.
          Length = 132

 Score =  101 bits (243), Expect = 4e-22
 Identities = 47/113 (41%), Positives = 70/113 (61%)
 Frame = +1

Query: 346 VMCSGPSMEPTLESNNILLTEHISPRLQKLRRGDIIIAKSPSNPRQNICKRIKGLPGDKV 525
           V+CSGPSM PT+   +++L E  S R + ++ GDI+   +P  P++ +CKRI    GD V
Sbjct: 2   VICSGPSMHPTIHDGDLVLAERFSIRNKNVQVGDIVGCVNPQKPKELLCKRIAAKEGDPV 61

Query: 526 RGNFPKRSQVVPRGHVWLEGDNSSNSADSRIYGPVPAGLIRSRVVCRVWPLDK 684
             +     + VP GHV+L GDN   S DSR +GPVP  L++ R+  R+WP ++
Sbjct: 62  TSHLLPSGR-VPIGHVFLRGDNGPVSTDSRHFGPVPEALVQIRLSLRIWPPER 113


>AC024826-5|AAF60800.1|  152|Caenorhabditis elegans Hypothetical
           protein Y55F3AM.8 protein.
          Length = 152

 Score = 69.3 bits (162), Expect = 3e-12
 Identities = 40/129 (31%), Positives = 61/129 (47%), Gaps = 6/129 (4%)
 Frame = +1

Query: 307 CITHCTFEYIGDFVMCSGPSMEPTLESNNILLTEH----ISP-RLQKLRRGDIIIAKSPS 471
           C+    F+ +G      G SM+PTL+  +    +     +S   L K   G I+   SP 
Sbjct: 15  CVVFTFFDVVGHPAQVVGNSMQPTLQGGDARWYKRDIVWLSTWNLYKCSPGTILTFVSPR 74

Query: 472 NPRQNICKRIKGLPGDKVRGNF-PKRSQVVPRGHVWLEGDNSSNSADSRIYGPVPAGLIR 648
           +P     KR+  +    VR    P+    +P+GH W+EGDN  +  DS +YGPV   L++
Sbjct: 75  DPDAVHIKRVTAVENAIVRPEKRPELITDIPKGHYWMEGDNPEHRHDSNVYGPVSTSLVK 134

Query: 649 SRVVCRVWP 675
            R    +WP
Sbjct: 135 GRATHIIWP 143


>AC199169-1|ABO33259.1|  450|Caenorhabditis elegans Hypothetical
           protein F38A1.8 protein.
          Length = 450

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 19/65 (29%), Positives = 32/65 (49%)
 Frame = +1

Query: 364 SMEPTLESNNILLTEHISPRLQKLRRGDIIIAKSPSNPRQNICKRIKGLPGDKVRGNFPK 543
           SM   L     L  E ++P ++K+R  ++I+    S P + IC+ +      KV  NF +
Sbjct: 316 SMIKGLVGEKKLSAEDLNPLIEKMRE-NLILKNVASEPAEKICQSVVSKLEGKVVNNFSR 374

Query: 544 RSQVV 558
            +Q V
Sbjct: 375 VAQEV 379


>U00058-6|AAA50729.2|  189|Caenorhabditis elegans Hypothetical
           protein W03A5.5 protein.
          Length = 189

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = -3

Query: 407 SVNRMLFDSSVGSIDGPEHMTKSPIYSNVQCVIQAYCKA*PMKPQVLP 264
           S N +   ++  S D PE +T++P Y  + C +  Y K+ P K  + P
Sbjct: 85  SENDLSAGAAGASTDFPE-VTRTPSYLRISCALNGYTKS-PNKSDLTP 130


>AF077542-11|AAC26296.1|  137|Caenorhabditis elegans Hypothetical
           protein Y57G7A.1 protein.
          Length = 137

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -3

Query: 413 MCSVNRMLFDSSVGSIDGPEHMTKS 339
           +CSV+  LFD+ +GS +   + TKS
Sbjct: 113 LCSVHTSLFDNDLGSAESEVYCTKS 137


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,761,240
Number of Sequences: 27780
Number of extensions: 354186
Number of successful extensions: 752
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)