Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11e24
         (725 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyce...    28   1.2  
SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase |Schizos...    27   2.7  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    27   3.6  
SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces pombe...    26   6.3  
SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase |Schizosaccharo...    26   6.3  
SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces ...    25   8.3  
SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomy...    25   8.3  

>SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 906

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +1

Query: 205 EYGIMIIDECPSGDTDIFTQSLLNKHKQSLT 297
           +YG +++D+ P   T+IF Q   N H+  L+
Sbjct: 543 KYGRVLLDKLPEKTTNIFIQFYSNSHRGDLS 573


>SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 891

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
 Frame = +1

Query: 106 LWVKNF--NLIKWIGANAFRTSHYPYAEEIYQ--LADEYGIMIIDECPSGD 246
           L + NF  N + W G + F   HY Y   I    +AD+  I+ I  C   D
Sbjct: 645 LLILNFDGNAVTWEGRHEFVDFHYGYMVSILSKLIADDRNIVYIASCLEED 695


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 15/90 (16%), Positives = 33/90 (36%), Gaps = 4/90 (4%)
 Frame = +1

Query: 349 SNEPRSAKQQADAYFAEVVKHVKSMDLSRPVTIAISQYYNTDRAGQHLDVICFNRYNGW- 525
           ++ P   K+  +    +V+K +   ++ R   I     YN     +    +C      W 
Sbjct: 609 ASAPNKKKKTVETLQQQVIKEIARKEIPRVYKIIQQNQYNRSTNARKTSQLCGREARRWQ 668

Query: 526 ---YQNTGDLNYIVSKVVEEATEFHRRHNK 606
               +N  D+     + + E   F +R+ +
Sbjct: 669 FRTIKNNKDMQTKAKRAMRETMVFWKRNER 698


>SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 568

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = +1

Query: 223 IDECPSGDTDIFTQSLLNKHKQSLTELIRRDKNHPSVIMWSIS 351
           ID  P G  D++  S    H         R  N P +I+W++S
Sbjct: 296 IDYGPFGFLDVYNPSFTPNHDDVFLRYSYR--NQPDIIIWNLS 336


>SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 571

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 18/59 (30%), Positives = 24/59 (40%)
 Frame = -3

Query: 384 IGLLFGRPRLVGDGPHDDARVILVASDELRQ*LFVLIQ*RLREDVCVSAGTLINDHYPI 208
           +G +FG    V D    D R ILV  D   Q     I   +R ++      + ND Y I
Sbjct: 424 VGAMFGAVLAVHDSKEPDRRTILVVGDGSLQLTITEISTCIRHNLKPIIFIINNDGYTI 482


>SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 695

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +1

Query: 190 YQLADEYGIMIIDECPSG-DTDIFTQSLLNKHKQSLTELIRRDKNHPSVIM 339
           Y ++D   I+  D+  S  +   F QSL  +H+ +L   + +DK  P +++
Sbjct: 359 YTISDTNIIVPKDDFESKLNFSAFVQSLEREHRYALARFVSKDKGVPVLLV 409


>SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 13/41 (31%), Positives = 16/41 (39%)
 Frame = -1

Query: 143 PIHLIKLKFFTHKTGSHPLPLRSESSCIPNPLRYNGFEFKY 21
           PI L+K +    K        RS   CI   +R  GF   Y
Sbjct: 182 PIWLVKTRLQLDKKSGQAAQYRSSIDCIIKTIRLEGFRGLY 222


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,068,577
Number of Sequences: 5004
Number of extensions: 62844
Number of successful extensions: 158
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)