Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte11e24
         (725 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37254| Best HMM Match : Glyco_hydro_2_C (HMM E-Value=0)            166   1e-41
SB_41571| Best HMM Match : Glyco_hydro_2_C (HMM E-Value=6.4e-11)      156   2e-38
SB_41589| Best HMM Match : Glyco_hydro_2 (HMM E-Value=6.1e-36)        132   4e-31
SB_47972| Best HMM Match : Glyco_hydro_2_C (HMM E-Value=1.7e-08)      128   6e-30
SB_22315| Best HMM Match : No HMM Matches (HMM E-Value=.)              87   2e-17
SB_41573| Best HMM Match : Glyco_hydro_2_C (HMM E-Value=0.3)           72   5e-13
SB_7096| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.8  
SB_34994| Best HMM Match : PI3K_rbd (HMM E-Value=2.4)                  29   3.8  
SB_24482| Best HMM Match : KID (HMM E-Value=0.045)                     28   6.7  
SB_2074| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.9  

>SB_37254| Best HMM Match : Glyco_hydro_2_C (HMM E-Value=0)
          Length = 428

 Score =  166 bits (404), Expect = 1e-41
 Identities = 74/147 (50%), Positives = 102/147 (69%), Gaps = 3/147 (2%)
 Frame = +1

Query: 13  TTIYLNSKPLYLRGFGMHEDSDLRGKGWDPVLWVKNFNLIKWIGANAFRTSHYPYAEEIY 192
           T   +N++  Y +GFG HED+++RGKG D VL  K+FNL+KW+G N+FRTSHYPYAEEI 
Sbjct: 30  TKFLINNREFYFKGFGKHEDANIRGKGLDNVLIAKDFNLMKWLGGNSFRTSHYPYAEEIM 89

Query: 193 QLADEYGIMIIDECPSGD---TDIFTQSLLNKHKQSLTELIRRDKNHPSVIMWSISNEPR 363
            +AD  GI++IDE P      +D F    L  H++ + EL+RRDKN P+V+MWS++NEP 
Sbjct: 90  DMADRTGIVVIDESPGVGIHYSDNFGPVSLKHHQEVMAELVRRDKNRPAVVMWSVANEPL 149

Query: 364 SAKQQADAYFAEVVKHVKSMDLSRPVT 444
           S   QA+ YFA +    + +D +RPVT
Sbjct: 150 SNLAQAEKYFAPIFSETRKLDPTRPVT 176



 Score = 30.3 bits (65), Expect = 1.7
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +1

Query: 484 QHLDVICFNRYNGWYQNTGDLNYIVSKVVEEATEF 588
           Q +DVI  NRY  WY + G    I  ++ EE  ++
Sbjct: 243 QFVDVILCNRYYAWYHDFGQTQLISRQLEEELMDW 277


>SB_41571| Best HMM Match : Glyco_hydro_2_C (HMM E-Value=6.4e-11)
          Length = 184

 Score =  156 bits (378), Expect = 2e-38
 Identities = 68/134 (50%), Positives = 94/134 (70%), Gaps = 2/134 (1%)
 Frame = +1

Query: 13  TTIYLNSKPLYLRGFGMHEDSDLRGKGWDPVLWVKNFNLIKWIGANAFRTSHYPYAEEIY 192
           T   +N K  Y +GFG HED+++RGKG D V+  K+FNL+KW+G N+FRTSHYPYAEEI 
Sbjct: 27  TKFLINDKEFYFKGFGKHEDANIRGKGVDNVIIAKDFNLMKWLGGNSFRTSHYPYAEEIM 86

Query: 193 QLADEYGIMIIDECPSGDTD--IFTQSLLNKHKQSLTELIRRDKNHPSVIMWSISNEPRS 366
            +AD  GI++IDECP+   +    T  L  +H Q + EL+RRDKN P+V+MWS++NEP +
Sbjct: 87  DMADRTGIVVIDECPAVGIEPANLTPELQKRHTQEMMELVRRDKNRPAVVMWSVANEPPT 146

Query: 367 AKQQADAYFAEVVK 408
            K  +  YF  V++
Sbjct: 147 DKPASLDYFKYVIR 160


>SB_41589| Best HMM Match : Glyco_hydro_2 (HMM E-Value=6.1e-36)
          Length = 316

 Score =  132 bits (318), Expect = 4e-31
 Identities = 67/137 (48%), Positives = 91/137 (66%), Gaps = 20/137 (14%)
 Frame = +1

Query: 25  LNSKPLYLRGFGMHEDSDLRGKGWDPVLWVKNFNLIKWIGANAFRTSHYPYAEEIYQLAD 204
           +N KP Y  GFG HED+DLRGKG+D VL V +  L+ WIGAN++RTSHYPYAEE+   AD
Sbjct: 179 INHKPFYFTGFGRHEDADLRGKGFDNVLMVHDHALMDWIGANSYRTSHYPYAEEMLDWAD 238

Query: 205 EYGIMIIDEC-------------PSGD--TDIFTQSLLN-----KHKQSLTELIRRDKNH 324
           E+GI++IDE               +G+   +++++  +N      H Q++ ELI RDKNH
Sbjct: 239 EHGIVVIDETAAVGFNLSLGIGFEAGNKPKELYSEEAVNGETQQAHLQAIKELIARDKNH 298

Query: 325 PSVIMWSISNEPRSAKQ 375
           PSV+MWSI+NEP +  Q
Sbjct: 299 PSVVMWSIANEPDTRPQ 315


>SB_47972| Best HMM Match : Glyco_hydro_2_C (HMM E-Value=1.7e-08)
          Length = 224

 Score =  128 bits (308), Expect = 6e-30
 Identities = 62/122 (50%), Positives = 81/122 (66%), Gaps = 4/122 (3%)
 Frame = +1

Query: 91  GWDPVLWVKNFNLIKWIGANAFRTSHYPYAEEIYQLADEYGIMIIDECPS---GDTDIFT 261
           G+D    VK+FNL+KW GAN+FRTSHYPY+EE   LAD  GI+IIDE  +      + F 
Sbjct: 87  GFDYPQLVKDFNLLKWFGANSFRTSHYPYSEETMDLADRLGIVIIDEGSAVGFSKPEYFN 146

Query: 262 QSLLNKHKQSLTELIRRDKNHPSVIMWSISNEPRSAKQQADAYFAEVVKHVKSMD-LSRP 438
              L++H   +T+LIRRDKNHPSV+MWS++NEP +    A AY   V+   K +D  +RP
Sbjct: 147 DKSLSQHLSMITDLIRRDKNHPSVVMWSVANEPHTDTDTAAAYLRSVIDLAKKLDKQARP 206

Query: 439 VT 444
           VT
Sbjct: 207 VT 208


>SB_22315| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 66

 Score = 86.6 bits (205), Expect = 2e-17
 Identities = 35/57 (61%), Positives = 46/57 (80%)
 Frame = +1

Query: 70  DSDLRGKGWDPVLWVKNFNLIKWIGANAFRTSHYPYAEEIYQLADEYGIMIIDECPS 240
           +  +RGKG D V+  K+FNL+KW+G N+FRTSHYPYAEEI  +AD  GI++IDECP+
Sbjct: 5   EEGIRGKGVDNVIIAKDFNLMKWLGGNSFRTSHYPYAEEIMDMADRTGIVVIDECPA 61


>SB_41573| Best HMM Match : Glyco_hydro_2_C (HMM E-Value=0.3)
          Length = 173

 Score = 71.7 bits (168), Expect = 5e-13
 Identities = 30/56 (53%), Positives = 38/56 (67%)
 Frame = +1

Query: 493 DVICFNRYNGWYQNTGDLNYIVSKVVEEATEFHRRHNKPVIMTEYGADTVAGLHFI 660
           DVI FNRY GWY + G    I  ++  +   FH ++NKPVIM EYGADT+AGLH +
Sbjct: 49  DVIMFNRYYGWYADFGGTQLISRQLERDLRAFHEKYNKPVIMAEYGADTIAGLHSV 104


>SB_7096| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 412

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 20/100 (20%), Positives = 43/100 (43%), Gaps = 1/100 (1%)
 Frame = +1

Query: 76  DLRGKGWDPVLWVKNFNLIKWIGANAFRTSHYPYAEEIYQLADEYGIMIIDECPSGDTDI 255
           D+R K  D    + N+  + ++G    +    P++  +YQL   +G +  D   S  T +
Sbjct: 278 DVRNKAQDVWSKIGNWLCLYFMGRYKNKCIDSPHSAPLYQLTRNHGDVTGDSASSFTTSV 337

Query: 256 FTQSL-LNKHKQSLTELIRRDKNHPSVIMWSISNEPRSAK 372
           F  +   N +    +E + R +    + +   ++ PR  +
Sbjct: 338 FDDTFCTNPYYSPTSESMARTRRQLDLSLPDQASTPRRGR 377


>SB_34994| Best HMM Match : PI3K_rbd (HMM E-Value=2.4)
          Length = 244

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 13  TTIYLNSKPLYLRGFGMHEDSD 78
           T   +N K  Y +GFG HED++
Sbjct: 223 TKFLINDKEFYFKGFGKHEDAN 244


>SB_24482| Best HMM Match : KID (HMM E-Value=0.045)
          Length = 1714

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = +2

Query: 245 TQTSSRSLY*ISTNNH*RSSSDATRITRASSCGPSPTSRGL 367
           TQ ++ + +  +TN H  S++ AT  T A+S  P PTS  L
Sbjct: 46  TQATTTNTH-ATTNTHATSNTHATSNTHATSNTPKPTSNTL 85


>SB_2074| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1266

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +3

Query: 264 VSTE*AQTITDGAHQTRQESPERHHVV 344
           +S E +   T  +H+TR+ESP++H +V
Sbjct: 393 ISLEKSHRNTRNSHRTREESPKQHVIV 419


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,844,070
Number of Sequences: 59808
Number of extensions: 521075
Number of successful extensions: 1339
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1336
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)