Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte11e24
(725 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132877-15|CAC70111.1| 628|Caenorhabditis elegans Hypothetical... 208 2e-54
AC006629-1|AAK18925.1| 330|Caenorhabditis elegans Hypothetical ... 30 1.5
Z77653-3|CAB01126.1| 462|Caenorhabditis elegans Hypothetical pr... 29 4.5
Z75551-5|CAA99935.1| 462|Caenorhabditis elegans Hypothetical pr... 29 4.5
U40940-3|AAN39667.1| 455|Caenorhabditis elegans Nuclear hormone... 29 4.5
U40940-2|AAM69090.1| 434|Caenorhabditis elegans Nuclear hormone... 29 4.5
U40940-1|AAM69089.1| 439|Caenorhabditis elegans Nuclear hormone... 29 4.5
AF273782-1|AAG15131.1| 439|Caenorhabditis elegans nuclear recep... 29 4.5
AC024811-1|AAF60776.1| 494|Caenorhabditis elegans Dnaj domain (... 29 4.5
AL023828-18|CAA19462.2| 742|Caenorhabditis elegans Hypothetical... 28 5.9
AF022974-3|AAC48037.1| 346|Caenorhabditis elegans Seven tm rece... 28 5.9
AC025716-6|AAK95889.1| 401|Caenorhabditis elegans Hypothetical ... 28 5.9
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ... 28 7.8
>AL132877-15|CAC70111.1| 628|Caenorhabditis elegans Hypothetical
protein Y105E8B.9 protein.
Length = 628
Score = 208 bits (509), Expect = 2e-54
Identities = 95/237 (40%), Positives = 151/237 (63%), Gaps = 1/237 (0%)
Frame = +1
Query: 1 TWTNTTIYLNSKPLYLRGFGMHEDSDLRGKGWDPVLWVKNFNLIKWIGANAFRTSHYPYA 180
TW+++ I++NSKP Y GFGMHED ++ G+G++ + K+ NL++W+G N +RT+HYPY+
Sbjct: 320 TWSDSQIFINSKPFYCLGFGMHEDFEIIGRGFNQAIMTKDLNLLEWMGGNCYRTTHYPYS 379
Query: 181 EEIYQLADEYGIMIIDECPSGDTDIFTQSLLNKHKQSLTELIRRDKNHPSVIMWSISNEP 360
EE D GI +I E P+ F+++ N H + L ++I RDKNHPSVI WS++NEP
Sbjct: 380 EERMFENDRRGIAVIVETPAVGLKGFSKANNNLHVKMLQDMIDRDKNHPSVIAWSLANEP 439
Query: 361 RSAKQQADAYFAEVVKHVKSMDLSRPVTIAIS-QYYNTDRAGQHLDVICFNRYNGWYQNT 537
++ K+++ YF +V +D +RPVT ++ D+ +D IC NRY GWY +
Sbjct: 440 QTMKKESRNYFKTLVDTAHGIDRTRPVTTVYGPTNFDNDQTADLMDFICVNRYYGWYIDM 499
Query: 538 GDLNYIVSKVVEEATEFHRRHNKPVIMTEYGADTVAGLHFIPEYVWSEEYQVALMSE 708
G + +I V + + + +KP+I+TEYGAD++ GL+ P +SE+YQ ++ E
Sbjct: 500 GYIPWINQSVYWDISLWRETFHKPIIVTEYGADSIPGLNQEPSVDFSEQYQNEVIQE 556
>AC006629-1|AAK18925.1| 330|Caenorhabditis elegans Hypothetical
protein F12E12.5 protein.
Length = 330
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = +3
Query: 309 TRQESPERHHVVHL-QRAAVCQTTGRCLFR*SSETREVHGPLQTRHHRDLAI 461
T + + +RH + H ++ C T R FR R +H L+ R H D +
Sbjct: 73 TNKPNLKRHQITHSGSKSKKCSTCQRTFFREDQLQRHLHNHLKERSHFDCPV 124
>Z77653-3|CAB01126.1| 462|Caenorhabditis elegans Hypothetical
protein T28H10.3 protein.
Length = 462
Score = 28.7 bits (61), Expect = 4.5
Identities = 29/110 (26%), Positives = 44/110 (40%), Gaps = 6/110 (5%)
Frame = +1
Query: 97 DPVLWVKNFN-LIKWIGANAFRTSHYPYAEEIYQLADEYGIMIIDECPSGDTDIFTQSLL 273
D +L VK N ++ W+ N + Y E A E G M +E D DI+ S
Sbjct: 171 DGILTVKQLNDVLVWMHKNKKYSQLTFYLE-----ACESGSMF-EEVLRSDMDIYAISAA 224
Query: 274 NKHKQSLTELIRRDKNHPSV-----IMWSISNEPRSAKQQADAYFAEVVK 408
N H+ S D N P + + W ++ K + + E+VK
Sbjct: 225 NSHESSWGTFCENDMNLPCLGDLFSVNWMTDSDGEDLKTETLEFQYELVK 274
>Z75551-5|CAA99935.1| 462|Caenorhabditis elegans Hypothetical
protein T28H10.3 protein.
Length = 462
Score = 28.7 bits (61), Expect = 4.5
Identities = 29/110 (26%), Positives = 44/110 (40%), Gaps = 6/110 (5%)
Frame = +1
Query: 97 DPVLWVKNFN-LIKWIGANAFRTSHYPYAEEIYQLADEYGIMIIDECPSGDTDIFTQSLL 273
D +L VK N ++ W+ N + Y E A E G M +E D DI+ S
Sbjct: 171 DGILTVKQLNDVLVWMHKNKKYSQLTFYLE-----ACESGSMF-EEVLRSDMDIYAISAA 224
Query: 274 NKHKQSLTELIRRDKNHPSV-----IMWSISNEPRSAKQQADAYFAEVVK 408
N H+ S D N P + + W ++ K + + E+VK
Sbjct: 225 NSHESSWGTFCENDMNLPCLGDLFSVNWMTDSDGEDLKTETLEFQYELVK 274
>U40940-3|AAN39667.1| 455|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 40, isoform c protein.
Length = 455
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -1
Query: 152 AFAPIH-LIKLKFFTHKTGSHPLPLRSESSCIPNPL 48
AFAPI LI+L F+T + ++ E C P P+
Sbjct: 280 AFAPIFPLIQLAFYTRNEFECDIVIKLEPDCTPKPI 315
>U40940-2|AAM69090.1| 434|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 40, isoform b protein.
Length = 434
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -1
Query: 152 AFAPIH-LIKLKFFTHKTGSHPLPLRSESSCIPNPL 48
AFAPI LI+L F+T + ++ E C P P+
Sbjct: 259 AFAPIFPLIQLAFYTRNEFECDIVIKLEPDCTPKPI 294
>U40940-1|AAM69089.1| 439|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 40, isoform a protein.
Length = 439
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -1
Query: 152 AFAPIH-LIKLKFFTHKTGSHPLPLRSESSCIPNPL 48
AFAPI LI+L F+T + ++ E C P P+
Sbjct: 264 AFAPIFPLIQLAFYTRNEFECDIVIKLEPDCTPKPI 299
>AF273782-1|AAG15131.1| 439|Caenorhabditis elegans nuclear receptor
NHR-40 protein.
Length = 439
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -1
Query: 152 AFAPIH-LIKLKFFTHKTGSHPLPLRSESSCIPNPL 48
AFAPI LI+L F+T + ++ E C P P+
Sbjct: 264 AFAPIFPLIQLAFYTRNEFECDIVIKLEPDCTPKPI 299
>AC024811-1|AAF60776.1| 494|Caenorhabditis elegans Dnaj domain
(prokaryotic heat shockprotein) protein 28 protein.
Length = 494
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = -3
Query: 450 RDGDGSGEVHGLHVFHYFSEIGIG 379
R G G G HG H FH F+ G G
Sbjct: 457 RGGGGGGGSHGFHNFHGFNPFGGG 480
>AL023828-18|CAA19462.2| 742|Caenorhabditis elegans Hypothetical
protein Y17G7B.15b protein.
Length = 742
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/64 (21%), Positives = 29/64 (45%)
Frame = +1
Query: 289 SLTELIRRDKNHPSVIMWSISNEPRSAKQQADAYFAEVVKHVKSMDLSRPVTIAISQYYN 468
S+T+ +DK + W + ++ R A+ +D+ E+ +H M + V + Y
Sbjct: 142 SITDKALKDKKRGLSLEWEVKDQGRFAESFSDSRLMEMFQHPSGMPIEPDVMMEGYLYKR 201
Query: 469 TDRA 480
+ A
Sbjct: 202 SSNA 205
>AF022974-3|AAC48037.1| 346|Caenorhabditis elegans Seven tm
receptor protein 207 protein.
Length = 346
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = +1
Query: 334 IMWSISNEPRSAKQQADAYFAEVVKHVKSMDLSRPVTIAISQYYNTDRAG 483
I W ++ P S + AD Y + +V ++D+ + + IA +Y T+ G
Sbjct: 144 IWWFVTYFPCSPRPSADEYLRNEIMNVFNLDIDKNLYIA-PYFYETNSDG 192
>AC025716-6|AAK95889.1| 401|Caenorhabditis elegans Hypothetical
protein Y39G10AR.9 protein.
Length = 401
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +1
Query: 136 WIGANAFRTSHYPYAE-EIYQLADEYGIMIIDECPSGDTDIFTQSLLNKHK 285
++G F + + + +I +L DEYG ++ E S + FT L++HK
Sbjct: 35 YLGIKKFEATKTEFFQVQITKLVDEYGFAVMPEEGSIKSSDFTDVSLDEHK 85
>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
protein Y40C5A.3 protein.
Length = 2344
Score = 27.9 bits (59), Expect = 7.8
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = +2
Query: 230 SVPAETQTSSRSLY*ISTNNH*RSSSDATRITRASSCGPSPTSRGLPNNRPMPI 391
S P++T + L IS R S+ A + S+ PSP S+ +P +PI
Sbjct: 825 SRPSKTLLTPSELPIISNLPASRQSTSAPSVPNVSNNSPSPPSQSIPIESTVPI 878
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,226,364
Number of Sequences: 27780
Number of extensions: 360448
Number of successful extensions: 983
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 982
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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